nipype/pydra

Pydra Dataflow Engine

Language: Python - Size: 25.9 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 125 - Forks: 59

nipy/nipype

Workflows and interfaces for neuroimaging packages

Language: Python - Size: 75.6 MB - Last synced at: 4 days ago - Pushed at: 21 days ago - Stars: 781 - Forks: 532

brainsprite/brainsprite

Brainsprite turns a sprite of brain slices into a 3D interactive web viewer

Language: Python - Size: 28.7 MB - Last synced at: 17 days ago - Pushed at: 18 days ago - Stars: 43 - Forks: 20

brainets/frites

Framework for Information Theoretical analysis of Electrophysiological data and Statistics

Language: Python - Size: 409 MB - Last synced at: 5 days ago - Pushed at: 19 days ago - Stars: 91 - Forks: 21

aramis-lab/clinica

Software platform for clinical neuroimaging studies

Language: Python - Size: 35.1 MB - Last synced at: 17 days ago - Pushed at: about 1 month ago - Stars: 248 - Forks: 86

vanandrew/pynipe

An alternative pipeline execution library to nipype

Language: Python - Size: 243 KB - Last synced at: 21 days ago - Pushed at: 26 days ago - Stars: 0 - Forks: 0

Remi-Gau/eCobidas

Working repository to turn the COBIDAS guidelines to report methods and results in neuroimaging into a user friendly checklist

Language: Python - Size: 5.53 MB - Last synced at: 28 days ago - Pushed at: 28 days ago - Stars: 38 - Forks: 24

Orthogonal-Research-Lab/Meta-brain-Models

A project intended to bring context to embodied computational agents. Layered brains from hybrid models!

Size: 26.2 MB - Last synced at: 30 days ago - Pushed at: about 1 month ago - Stars: 8 - Forks: 3

PRIME-RE/prime-re.github.io

Open resource exchange platform for non-human primate neuroimaging

Language: HTML - Size: 18.6 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 19 - Forks: 9

ProjectPyRhO/PyRhO

A virtual optogenetics laboratory

Language: Python - Size: 3.8 MB - Last synced at: 5 days ago - Pushed at: almost 2 years ago - Stars: 36 - Forks: 9

ColeLab/ActflowToolbox

The Brain Activity Flow ("Actflow") Toolbox. Tools to quantify the relationship between connectivity and task activity through network simulations and machine learning prediction. Helps determine how connections contribute to specific brain functions.

Language: Python - Size: 134 MB - Last synced at: 17 days ago - Pushed at: 2 months ago - Stars: 38 - Forks: 11

paquiteau/brainweb-dl

Brainweb Dataset downloader

Language: Python - Size: 152 KB - Last synced at: 7 days ago - Pushed at: 3 months ago - Stars: 9 - Forks: 2

stefanches7/DeepVisual

Reconstruct visual stimuli from EEG data using Deep Learning

Language: Julia - Size: 358 KB - Last synced at: 5 days ago - Pushed at: about 5 years ago - Stars: 4 - Forks: 2

PRIME-RE/RheMAP

Non-linear warps between common rhesus macaque brain templates

Language: Jupyter Notebook - Size: 153 MB - Last synced at: 18 days ago - Pushed at: almost 2 years ago - Stars: 25 - Forks: 8

physiopy/phys2bids

Python3 library to format physiological files in BIDS. At the moment, it supports Acqknowledge and Labchart. BrainHack participants, check the issues with the BrainHack labels!

Language: Python - Size: 57.6 MB - Last synced at: 17 days ago - Pushed at: about 2 months ago - Stars: 65 - Forks: 45

anibalsolon/vscode-neuro-viewer

Check metadata and visualize neuroimages within VSCode.

Language: TypeScript - Size: 996 KB - Last synced at: about 1 month ago - Pushed at: about 2 years ago - Stars: 43 - Forks: 6

afids/afids-macaca Fork of greydongilmore/AFIDS_macaca

anatomical fiducials protocol adapted for macaques

Language: Jupyter Notebook - Size: 143 MB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 6 - Forks: 3

matteomancini/trampolino

TRAMPOLINO (TRActography Meta-Pipeline cOmmand LINe tOol) is a CLI for brain tractography. It leverages Nipype to offer an immediate way to reconstruct an orientation distribution function, use it to track the streamlines and eventually filter them, all using existing software toolboxes.

Language: Python - Size: 110 KB - Last synced at: 17 days ago - Pushed at: over 2 years ago - Stars: 6 - Forks: 2

verificarlo/fuzzy

A fuzzy ecosystem for evaluating the stability of your computational tools.

Language: Jupyter Notebook - Size: 14.8 MB - Last synced at: 12 months ago - Pushed at: 12 months ago - Stars: 15 - Forks: 14

afids/afids-validator

Validator for the anatomical fiducial placement protocol

Language: Python - Size: 8.72 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 2 - Forks: 4

brainlife/brainlife

Free cloud platform for secure neuroscience data analysis.

Language: Shell - Size: 708 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 67 - Forks: 15

neurabenn/T1ify

Applying style transfer to convert multi-modal MRI images to have a T1 like contrast.

Language: Jupyter Notebook - Size: 4.71 MB - Last synced at: about 1 year ago - Pushed at: about 5 years ago - Stars: 25 - Forks: 11

learn-neuroimaging/hitchhackers_guide_brain

A list of tutorials and other resources useful to learn open science and neuroimaging, EEG and MEG

Size: 5.35 MB - Last synced at: about 1 year ago - Pushed at: over 4 years ago - Stars: 113 - Forks: 40

brain-web/brain-web.github.io

A permanent online space for the community to meet&matcha, work&watermelon, catch up&coffee.

Language: JavaScript - Size: 4.58 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 21 - Forks: 10

eegmanylabs/website

Language: HTML - Size: 1000 Bytes - Last synced at: over 1 year ago - Pushed at: about 5 years ago - Stars: 1 - Forks: 0

ReproNim/segstats_jsonld

Script to Export Freesurfer-based Parcellation/Segmentation Stats and Provenance as JSON-LD and NIDM

Language: Python - Size: 2.18 MB - Last synced at: about 1 month ago - Pushed at: 3 months ago - Stars: 1 - Forks: 6

filipepiresg/counterapp

Counters App

Language: JavaScript - Size: 25.8 MB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

jajcayn/pygpso

Gaussian-Processes Surrogate Optimisation in python

Language: Python - Size: 3.09 MB - Last synced at: 4 days ago - Pushed at: about 4 years ago - Stars: 19 - Forks: 1

dandi/dandiarchive-legacy 📦

Code for the DANDI Web app

Language: Vue - Size: 2.6 MB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 9 - Forks: 9

htwangtw/sbfc

Seed-based resting-state functional connectivity with Nilearn.

Language: Python - Size: 112 KB - Last synced at: about 2 years ago - Pushed at: about 3 years ago - Stars: 2 - Forks: 0

ofgulban/slowest-particle-simulator-on-earth

A half-serious project to generate **very** serious brain explosions.

Language: Python - Size: 28.5 MB - Last synced at: 9 months ago - Pushed at: almost 3 years ago - Stars: 15 - Forks: 6

matteogithub/scorepochs

scorEpochs: a computer aided scoring tool for resting-state M/EEG epochs

Language: MATLAB - Size: 2.26 MB - Last synced at: about 2 years ago - Pushed at: about 4 years ago - Stars: 4 - Forks: 4

afids/afids-protocol

https://afids.github.io/afids-protocol/

Language: HTML - Size: 262 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 2

NeuroenergeticsLab/jupyter4xnat

Add Jupyter notebook as a service to XNAT

Language: Dockerfile - Size: 32.2 KB - Last synced at: about 2 years ago - Pushed at: about 5 years ago - Stars: 6 - Forks: 0

htwangtw/pyretroicor

Python implementation of RETROICOR - physiology regressors for fMRI preprocessing.

Language: Python - Size: 53.7 KB - Last synced at: almost 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

DCAN-Labs/SwipesForScienceToolkit

Tool kit for exploratory data analysis and usage of SwipesForScience JSON data, complete with anonymous sample data.

Language: Jupyter Notebook - Size: 15.8 MB - Last synced at: about 2 years ago - Pushed at: almost 5 years ago - Stars: 2 - Forks: 1

neuroanatomy/fiind

Interactive multimodal atlas of the development of the ferret brain.

Language: JavaScript - Size: 5.16 MB - Last synced at: about 2 years ago - Pushed at: about 5 years ago - Stars: 3 - Forks: 3