rordenlab/dcm2niix

dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC

Language: C++ - Size: 26.3 MB - Last synced: 12 days ago - Pushed: 28 days ago - Stars: 811 - Forks: 222

aramis-lab/clinica

Software platform for clinical neuroimaging studies

Language: Python - Size: 33.9 MB - Last synced: about 4 hours ago - Pushed: about 5 hours ago - Stars: 216 - Forks: 71

MedMaxLab/BIDSAlign

BIDSAlign a library for preprocessing and align multiple datasets to a common template.

Language: MATLAB - Size: 7.06 MB - Last synced: 4 days ago - Pushed: 4 days ago - Stars: 0 - Forks: 0

hed-standard/hed-javascript

HED/BIDS-friendly JavaScript validator.

Language: JavaScript - Size: 2.57 MB - Last synced: 6 days ago - Pushed: 6 days ago - Stars: 2 - Forks: 6

NPACore/reproin-namer

Web guided ReproIn MR scan sequence namer and name->nifti pipeline checker

Language: HTML - Size: 373 KB - Last synced: 5 days ago - Pushed: 6 days ago - Stars: 2 - Forks: 1

cpp-lln-lab/CPP_PTB

a set of function to make it easier to create behavioral, EEG, fMRI experiment with psychtoolbox

Language: MATLAB - Size: 1.69 MB - Last synced: 15 days ago - Pushed: 15 days ago - Stars: 12 - Forks: 13

MRC-CBU/BIDS_conversion

Tutorials for organising MEG/EEG and MRI data into BIDS standard.

Language: Python - Size: 210 KB - Last synced: 15 days ago - Pushed: 15 days ago - Stars: 0 - Forks: 1

jmtyszka/bidskit

Utility functions for working with DICOM and BIDS neuroimaging data

Language: Python - Size: 975 KB - Last synced: 19 days ago - Pushed: 20 days ago - Stars: 59 - Forks: 40

IanEisenberg/fmri_utils

Language: Python - Size: 24.4 KB - Last synced: about 1 month ago - Pushed: almost 6 years ago - Stars: 2 - Forks: 2

DCAN-Labs/abcd-hcp-pipeline

bids application for processing functional MRI data, robust to scanner, acquisition and age variability.

Language: Python - Size: 302 KB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 44 - Forks: 19

AndysWorth/BIDS-Curation-GUI

A Graphical User Interface to help with BIDS Curation

Language: Python - Size: 53.6 MB - Last synced: about 1 month ago - Pushed: almost 4 years ago - Stars: 2 - Forks: 2

hed-standard/hed-schemas

Repository for HED schemas. The SCORE library for clinical annotations is now available.

Language: Python - Size: 2.49 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 0 - Forks: 8

ellisdg/HCPLifespan2BIDS

Convert HCP Lifespan, Aging, and Development data to BIDS format

Language: Python - Size: 104 KB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 2 - Forks: 1

brainhack-ch/superres-mri

Portable, modular, reusable, and reproducible processing pipeline software for fetal brain MRI super-resolution

Language: Jupyter Notebook - Size: 13 MB - Last synced: 2 months ago - Pushed: over 4 years ago - Stars: 5 - Forks: 1

pabloreyesg/scripts-and-tools

Scripts in bash and python to manipulate dicom images

Language: Python - Size: 39.1 KB - Last synced: 25 days ago - Pushed: 7 months ago - Stars: 0 - Forks: 0

rystoli/afniGLMprep

afniGLMprep is python code which prepares and runs GLMs on neuroimaging data stored in the BIDS format (http://bids.neuroimaging.io/). This is done via AFNI's 3dDeconvolve function.

Language: Python - Size: 81.1 KB - Last synced: 7 months ago - Pushed: about 4 years ago - Stars: 6 - Forks: 4

rordenlab/MRIcroGL

v1.2 GLSL volume rendering. Able to view NIfTI, DICOM, MGH, MHD, NRRD, AFNI format images.

Language: Python - Size: 56.9 MB - Last synced: 7 months ago - Pushed: 8 months ago - Stars: 167 - Forks: 30

hed-standard/CTagger

CTagger GUI for annotating datasets using Hierarchical Event Descriptors (HED).

Language: Kotlin - Size: 25.9 MB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 1 - Forks: 3

lorenzomagazzini/meg-bids-matlab

MATLAB code for MEG-BIDS. See also meg-bids-python (Python version).

Language: Matlab - Size: 12.7 KB - Last synced: 7 months ago - Pushed: over 5 years ago - Stars: 2 - Forks: 0

johnsaigle/loris-mri-BIDS-parser 📦

Tool to help parse very large BIDS datasets

Language: Python - Size: 11.7 KB - Last synced: 8 months ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 0

courtois-neuromod/AuditoryData_pipeline

Language: Python - Size: 9.17 MB - Last synced: 9 months ago - Pushed: 9 months ago - Stars: 0 - Forks: 1

brain-products/BVTools

BV2BIDS is a command line tool that creates the EEG-BIDS folder hierarchy from BVCD files.

Language: C# - Size: 147 KB - Last synced: 10 months ago - Pushed: about 1 year ago - Stars: 6 - Forks: 4

dangom/dac2bids

Create a BIDS structure for a DICOM folder.

Language: Python - Size: 19.5 KB - Last synced: 3 months ago - Pushed: over 6 years ago - Stars: 9 - Forks: 2

rob-luke/BIDS-NIRS-Tapping

Example fNIRS BIDS dataset

Size: 227 MB - Last synced: 2 months ago - Pushed: over 1 year ago - Stars: 8 - Forks: 5

christianparet/RaBIDS

Rapid and automated conversion of neuroimaging data to BIDS

Language: MATLAB - Size: 14.8 MB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 1 - Forks: 0

dcdace/COGNESTIC-fMRI

Materials for the "fMRI analysis" workshop at the Cognitive Neuroscience Skills Training In Cambridge (COGNESTIC-2022).

Language: Jupyter Notebook - Size: 39.2 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 4 - Forks: 3

carobellum/data-sharing-tools

Tools created for sharing of MRI and behavioural data as part of my work with Professor Kate Watkins in the Speech & Brain Lab at the University of Oxford.

Language: Shell - Size: 2.54 MB - Last synced: about 1 month ago - Pushed: about 3 years ago - Stars: 4 - Forks: 0

ellisdg/BIDSManager

Easily convert to, organize, and manage BIDS imaging data in Python

Language: Python - Size: 1.76 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 7 - Forks: 1

NeuroCognitiveImagingLab/BIDS

Template for new EEG studies in NCIL, using BIDS-compliant structure and scripts to import data.

Language: Jupyter Notebook - Size: 5.41 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 1

PSY6983-2021/clandry_project

Brain Hack School 2021 project that explores the stages of data preprocessing up to machine learning classification.

Language: Jupyter Notebook - Size: 63.4 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 1

hed-standard/.github

HED Standard Organization Profile Page

Language: HTML - Size: 5.86 KB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

laureate-institute-for-brain-research/redcap-to-bids

Scripts to convert redcap api exports to bids format

Language: Python - Size: 114 KB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 1 - Forks: 0

jackgray/dcm2bids

Language: Python - Size: 18.1 MB - Last synced: about 1 year ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 0

dddd1007/NfMRIx

The NEXT fMRI analyisis workflow of xIA

Language: HTML - Size: 675 MB - Last synced: about 1 year ago - Pushed: about 5 years ago - Stars: 7 - Forks: 4

GIfMI/matbids

Matlab implementation of the BIDS specification

Language: MATLAB - Size: 303 KB - Last synced: about 1 year ago - Pushed: about 4 years ago - Stars: 2 - Forks: 1

MotivatedMemoryLab/biacpype

A pipeline for converting data from Duke BIAC to BIDS format

Language: Python - Size: 21.6 MB - Last synced: about 1 month ago - Pushed: about 5 years ago - Stars: 2 - Forks: 6