rordenlab/dcm2niix

dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC

Language: C++ - Size: 28 MB - Last synced at: 1 day ago - Pushed at: 1 day ago - Stars: 988 - Forks: 233

PennLINC/qsirecon

Reconstruction of preprocessed q-space images (dMRI)

Language: Python - Size: 179 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 11 - Forks: 12

spatialtopology/ds005256

BIDS raw dataset (also on OpenNeuro)

Language: Shell - Size: 160 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 1 - Forks: 0

NeuroCognitiveImagingLab/BIDS

Template for new EEG studies in NCIL, using BIDS-compliant structure and scripts to import data.

Language: Jupyter Notebook - Size: 5.43 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 0 - Forks: 1

hed-standard/hed-javascript

HED/BIDS-friendly JavaScript validator.

Language: HTML - Size: 4.98 MB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 3 - Forks: 7

aramis-lab/clinica

Software platform for clinical neuroimaging studies

Language: Python - Size: 35.4 MB - Last synced at: 11 days ago - Pushed at: 11 days ago - Stars: 256 - Forks: 88

DCAN-Labs/abcd-hcp-pipeline

bids application for processing functional MRI data, robust to scanner, acquisition and age variability.

Language: Python - Size: 346 KB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 55 - Forks: 20

hed-standard/hed-schemas

Repository for HED schemas. The SCORE library for clinical annotations is now available.

Language: Shell - Size: 3.91 MB - Last synced at: 20 days ago - Pushed at: 20 days ago - Stars: 2 - Forks: 11

NPACore/reproin-namer

Web guided ReproIn MR scan sequence namer and name->nifti pipeline checker

Language: HTML - Size: 6.71 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 3 - Forks: 3

jmtyszka/bidskit

Utility functions for working with DICOM and BIDS neuroimaging data

Language: Python - Size: 766 KB - Last synced at: 10 days ago - Pushed at: about 1 month ago - Stars: 62 - Forks: 41

ellisdg/HCPLifespan2BIDS

Convert HCP Lifespan, Aging, and Development data to BIDS format

Language: Python - Size: 36.1 KB - Last synced at: about 1 month ago - Pushed at: 3 months ago - Stars: 5 - Forks: 1

ellisdg/BIDSManager

Easily convert to, organize, and manage BIDS imaging data in Python

Language: Python - Size: 1.81 MB - Last synced at: about 1 month ago - Pushed at: about 2 months ago - Stars: 7 - Forks: 1

rob-luke/BIDS-NIRS-Tapping

Example fNIRS BIDS dataset

Size: 227 MB - Last synced at: 25 days ago - Pushed at: over 2 years ago - Stars: 12 - Forks: 6

rordenlab/MRIcroGL

v1.2 GLSL volume rendering. Able to view NIfTI, DICOM, MGH, MHD, NRRD, AFNI format images.

Language: Python - Size: 57 MB - Last synced at: about 2 months ago - Pushed at: 7 months ago - Stars: 223 - Forks: 34

h-bagherzadeh/MEG-to-BIDS-Automatic-Conversion

This Python script processes MEG data, primarily for CTF datasets, anonymizes it, converts it to BIDS format, and copies anatomical files. It can be adapted for other MEG datasets. The script also logs errors and generates a CSV mapping subject names to numbers.

Language: Python - Size: 9.77 KB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0

lazybids/lazybids

Python package to help interact with BIDS formated medical imaging datasets

Language: Python - Size: 1.06 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 1 - Forks: 0

cpp-lln-lab/CPP_PTB

a set of function to make it easier to create behavioral, EEG, fMRI experiment with psychtoolbox

Language: MATLAB - Size: 1.69 MB - Last synced at: 3 months ago - Pushed at: 7 months ago - Stars: 14 - Forks: 13

DVS-Lab/SRPAL-DataInBrief

This repository contains the final code for managing and processing all current data in our SRPAL project.

Language: MATLAB - Size: 489 MB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 1 - Forks: 0

dangom/dac2bids

Create a BIDS structure for a DICOM folder.

Language: Python - Size: 19.5 KB - Last synced at: 1 day ago - Pushed at: over 7 years ago - Stars: 12 - Forks: 2

dddd1007/NfMRIx

The NEXT fMRI analyisis workflow of xIA

Language: HTML - Size: 675 MB - Last synced at: about 2 hours ago - Pushed at: about 6 years ago - Stars: 9 - Forks: 4

MedMaxLab/BIDSAlign

BIDSAlign a library for preprocessing and align multiple datasets to a common template.

Language: MATLAB - Size: 7.43 MB - Last synced at: 12 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 2

MRC-CBU/BIDS_conversion

Tutorials for organising MEG/EEG and MRI data into BIDS standard.

Language: Python - Size: 210 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 1

IanEisenberg/fmri_utils

Language: Python - Size: 24.4 KB - Last synced at: about 1 year ago - Pushed at: almost 7 years ago - Stars: 2 - Forks: 2

AndysWorth/BIDS-Curation-GUI

A Graphical User Interface to help with BIDS Curation

Language: Python - Size: 53.6 MB - Last synced at: about 1 year ago - Pushed at: about 5 years ago - Stars: 2 - Forks: 2

brainhack-ch/superres-mri

Portable, modular, reusable, and reproducible processing pipeline software for fetal brain MRI super-resolution

Language: Jupyter Notebook - Size: 13 MB - Last synced at: 3 months ago - Pushed at: over 5 years ago - Stars: 5 - Forks: 1

pabloreyesg/scripts-and-tools

Scripts in bash and python to manipulate dicom images

Language: Python - Size: 39.1 KB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

rystoli/afniGLMprep

afniGLMprep is python code which prepares and runs GLMs on neuroimaging data stored in the BIDS format (http://bids.neuroimaging.io/). This is done via AFNI's 3dDeconvolve function.

Language: Python - Size: 81.1 KB - Last synced at: over 1 year ago - Pushed at: over 5 years ago - Stars: 6 - Forks: 4

lorenzomagazzini/meg-bids-matlab

MATLAB code for MEG-BIDS. See also meg-bids-python (Python version).

Language: Matlab - Size: 12.7 KB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 2 - Forks: 0

courtois-neuromod/AuditoryData_pipeline

Language: Python - Size: 9.17 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 1

brain-products/BVTools

BV2BIDS is a command line tool that creates the EEG-BIDS folder hierarchy from BVCD files.

Language: C# - Size: 147 KB - Last synced at: almost 2 years ago - Pushed at: over 2 years ago - Stars: 6 - Forks: 4

christianparet/RaBIDS

Rapid and automated conversion of neuroimaging data to BIDS

Language: MATLAB - Size: 14.8 MB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0

dcdace/COGNESTIC-fMRI

Materials for the "fMRI analysis" workshop at the Cognitive Neuroscience Skills Training In Cambridge (COGNESTIC-2022).

Language: Jupyter Notebook - Size: 39.2 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 4 - Forks: 3

carobellum/data-sharing-tools

Tools created for sharing of MRI and behavioural data as part of my work with Professor Kate Watkins in the Speech & Brain Lab at the University of Oxford.

Language: Shell - Size: 2.54 MB - Last synced at: 4 months ago - Pushed at: over 4 years ago - Stars: 4 - Forks: 0

johnsaigle/loris-mri-BIDS-parser 📦

Tool to help parse very large BIDS datasets

Language: Python - Size: 11.7 KB - Last synced at: about 1 year ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 0

PSY6983-2021/clandry_project

Brain Hack School 2021 project that explores the stages of data preprocessing up to machine learning classification.

Language: Jupyter Notebook - Size: 63.4 MB - Last synced at: 11 months ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 1

hed-standard/CTagger

CTagger GUI for annotating datasets using Hierarchical Event Descriptors (HED).

Language: Kotlin - Size: 26.5 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 1 - Forks: 3

hed-standard/.github

HED Standard Organization Profile Page

Language: HTML - Size: 5.86 KB - Last synced at: over 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

laureate-institute-for-brain-research/redcap-to-bids

Scripts to convert redcap api exports to bids format

Language: Python - Size: 114 KB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0

jackgray/dcm2bids

Language: Python - Size: 18.1 MB - Last synced at: over 2 years ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0

GIfMI/matbids

Matlab implementation of the BIDS specification

Language: MATLAB - Size: 303 KB - Last synced at: about 2 years ago - Pushed at: about 5 years ago - Stars: 2 - Forks: 1

MotivatedMemoryLab/biacpype

A pipeline for converting data from Duke BIAC to BIDS format

Language: Python - Size: 21.6 MB - Last synced at: about 1 year ago - Pushed at: about 6 years ago - Stars: 2 - Forks: 6