GitHub topics: nifti-format
rordenlab/dcm2niix
dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC
Language: C++ - Size: 26.9 MB - Last synced at: about 8 hours ago - Pushed at: about 1 month ago - Stars: 964 - Forks: 231
FNNDSC/ami
AMI Medical Imaging (AMI) JS ToolKit
Language: JavaScript - Size: 159 MB - Last synced at: about 12 hours ago - Pushed at: over 2 years ago - Stars: 731 - Forks: 213
Fundacion-CIEN/anapyze
A set of tools for medical imaging processing and analysis that I have been crafting over the years.
Language: Python - Size: 596 KB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 1 - Forks: 0
loli/medpy
Medical image processing in Python
Language: Jupyter Notebook - Size: 12.5 MB - Last synced at: 10 days ago - Pushed at: 8 months ago - Stars: 598 - Forks: 141
tomaroberts/nii2dcm
nii2dcm: NIfTI to DICOM creation with Python
Language: Python - Size: 21.1 MB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 72 - Forks: 16
neurolabusc/nii2mesh
Convert NIfTI volume to triangulated mesh using marching cubes
Language: C - Size: 4.57 MB - Last synced at: 25 days ago - Pushed at: 26 days ago - Stars: 163 - Forks: 19
GiulioRusso/Ni-Dataset
Python package to manage NIfTI images dataset
Language: Python - Size: 592 KB - Last synced at: 14 days ago - Pushed at: 27 days ago - Stars: 0 - Forks: 0
NeuroJSON/jnifty
Portable MATLAB/Octave toolbox for reading/writing NIFTI-1/2 and JNIFTI files
Language: MATLAB - Size: 157 KB - Last synced at: about 22 hours ago - Pushed at: about 2 months ago - Stars: 4 - Forks: 2
neurolabusc/MRIcron
Simple medical imaging visualization tool designed for NIfTI images. Includes dcm2nii for conversion of DICOM, Philips, and other proprietary formats.
Language: Pascal - Size: 34.4 MB - Last synced at: about 1 month ago - Pushed at: over 3 years ago - Stars: 69 - Forks: 26
jonclayden/RNifti
Fast R and C++ access to NIfTI images
Language: C - Size: 2.4 MB - Last synced at: 4 days ago - Pushed at: 3 months ago - Stars: 49 - Forks: 15
plwp/Nifti.NET
A basic library for reading, writing and manipulating NIfTI files.
Language: C# - Size: 1.23 MB - Last synced at: 7 days ago - Pushed at: almost 2 years ago - Stars: 12 - Forks: 8
addisonElliott/nifticlib
Nifticlib is a C I/O library for reading and writing files in the nifti-1 data format. nifti-1 is a binary file format for storing medical image data, e.g. magnetic resonance image (MRI) and functional MRI (fMRI) brain images.
Language: C - Size: 259 KB - Last synced at: about 2 months ago - Pushed at: almost 8 years ago - Stars: 1 - Forks: 2
neurolabusc/MRIcroGL10_OLD
DEPRECATED development has moved to https://github.com/rordenlab/MRIcroGL
Language: Pascal - Size: 89.5 MB - Last synced at: 2 months ago - Pushed at: over 4 years ago - Stars: 59 - Forks: 24
Enet4/nifti-rs
Rust implementation of the NIfTI-1 format
Language: Rust - Size: 1.04 MB - Last synced at: 27 days ago - Pushed at: about 1 month ago - Stars: 43 - Forks: 13
okieraised/gonii
Standalone NIfTI file parser
Language: Go - Size: 22 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 8 - Forks: 1
wtclarke/nifti_mrs_tools
Software tools for the NIfTI-MRS data format
Language: Python - Size: 7.19 MB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 0 - Forks: 5
deepc-health/nekton
A python package for DICOM to NifTi and NifTi to DICOM-SEG and GSPS conversion
Language: Python - Size: 1.2 MB - Last synced at: 3 months ago - Pushed at: over 1 year ago - Stars: 11 - Forks: 2
pranavlabdhe/NIfTI-Reader-Neuroimaging-Informatics-Technology-Initiative-
NIftI provides coordinated and targeted service, training, and research to speed the development and enhance the utility of informatics tools related to neuroimaging. My application helps to read the both NIfTI-1 and NIfT1-2 file formats with .nii extension
Language: JavaScript - Size: 7.12 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
rordenlab/nii2meshWeb
Online NIfTI voxels to triangulated mesh conversion
Language: C - Size: 3.14 MB - Last synced at: about 1 year ago - Pushed at: over 2 years ago - Stars: 17 - Forks: 3
yousef-seyfari/Computational-Neuroscience
This repository contains some codes for the computational neuroscience.
Language: Jupyter Notebook - Size: 5.01 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
as791/Multimodal-Brain-Tumor-Segmentation
Multimodal Brain Tumor Segmentation using BraTS 2018 Dataset.
Language: Jupyter Notebook - Size: 10.3 MB - Last synced at: almost 2 years ago - Pushed at: about 4 years ago - Stars: 41 - Forks: 15
josedolz/SemiDenseNet
Repository containing the code of one of the networks that we employed in the iSEG Grand MICCAI Challenge 2017, infant brain segmentation.
Language: Python - Size: 556 KB - Last synced at: almost 2 years ago - Pushed at: over 7 years ago - Stars: 56 - Forks: 18
rordenlab/MRIcroWeb
NIfTI volume rendering using WebGL
Language: JavaScript - Size: 18 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 20 - Forks: 8
pranath/predict_alzheimers
In this project I develop a deep learning CNN model to predict Alzheimer's disease using 3D MRI medical images of the Hippocampus region of the brain.
Language: Jupyter Notebook - Size: 1.1 MB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 6 - Forks: 7
Enet4/dicoogle-nifti
NIfTI-1 file converter for Dicoogle
Language: Java - Size: 51.8 KB - Last synced at: 3 months ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0
SIUE-BiomedicalImagingResearchLab/SIUE-Fat-Segmentation-Tool
This program will take in MRI images in the NIFTI format and display them on the screen. The user will draw a closed contour around specified areas of fat at multiple axial slices. These results are saved in a file to be validated with the VisceralFatSegmentation program. This program is created using Qt and C++.
Language: C++ - Size: 6.01 MB - Last synced at: over 1 year ago - Pushed at: over 7 years ago - Stars: 1 - Forks: 0
