GitHub topics: fmri-preprocessing
P-VS/AutoSPM12_processing
Automated processing of single echo (SE), multi-echo (ME) fMRI, ASLBOLD and VBM in SPM12.
Language: MATLAB - Size: 113 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 0 - Forks: 0
nipreps/fmriprep
fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
Language: HTML - Size: 57.5 MB - Last synced at: 7 days ago - Pushed at: 27 days ago - Stars: 664 - Forks: 301
andrewjahn/AndysBrainBook
This repository contains the files that generate Andy's Brain Book on ReadTheDocs.
Size: 877 MB - Last synced at: 12 days ago - Pushed at: 12 days ago - Stars: 189 - Forks: 70
shawntz/fmri
a (work in progress) attempt to transform the stanford memory lab's internal fmri preprocessing scripts into a generalizable template for consistency within and across lab projects
Language: Shell - Size: 286 KB - Last synced at: 12 days ago - Pushed at: 12 days ago - Stars: 2 - Forks: 0
nipreps/fmripost-rapidtide
A BIDS App for running rapidtide on a preprocessed fMRI dataset.
Language: Python - Size: 271 KB - Last synced at: 7 days ago - Pushed at: 15 days ago - Stars: 2 - Forks: 1
nipreps/fmripost-phase
An attempt at an fMRIPost workflow for handling phase data
Language: Python - Size: 183 KB - Last synced at: 7 days ago - Pushed at: 18 days ago - Stars: 3 - Forks: 1
nipreps/fmripost-aroma
Run ICA-AROMA on fMRIPrep derivatives
Language: Python - Size: 431 KB - Last synced at: 7 days ago - Pushed at: 15 days ago - Stars: 10 - Forks: 2
LabNeuroCogDevel/fmri_processing_scripts
legacy signal processing leveraging afni, ants, fsl, nipy, robex, and wavelet toolbox - brnfswdktm
Language: Shell - Size: 13 MB - Last synced at: 25 days ago - Pushed at: 25 days ago - Stars: 3 - Forks: 1
JeffTheNinja57/research_workshop
Comparing latent space representations using autoencoders and vision transformers using fMRI data.
Language: Python - Size: 17.3 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0
DCAN-Labs/abcd-hcp-pipeline
bids application for processing functional MRI data, robust to scanner, acquisition and age variability.
Language: Python - Size: 332 KB - Last synced at: 17 days ago - Pushed at: 17 days ago - Stars: 52 - Forks: 20
elliohow/fMRI_ROI_Analysis_Tool
An analysis tool that uses per-voxel statistical maps in conjunction with FSL atlases to create per-region statistical maps. Current usage includes the creation of regional maps of temporal signal to noise ratio.
Language: Python - Size: 327 MB - Last synced at: 7 days ago - Pushed at: 12 months ago - Stars: 13 - Forks: 4
dcdace/fMRI-COGNESTIC-23
Materials for the "fMRI analysis" workshop at the Cognitive Neuroscience Skills Training In Cambridge-2023 (COGNESTIC-2023).
Language: Jupyter Notebook - Size: 16 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 3 - Forks: 2
sepehr-mortaheb/fMRI_preproc_SPM
This repository suggests an organized pipeline for spatial preprocessing of fMRI data (both task-based and resting-state).
Language: MATLAB - Size: 29.3 KB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0
tambalostefano/lnifmri_prep
lnifmri_prep is a set of plain bash scripts to automate preprocessing and QC of fMRI data.
Language: Shell - Size: 5.81 MB - Last synced at: 6 months ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0
Remi-Gau/AVT_analysis
Code to analyze audio-visual-tactile high-resolution 7T data
Language: MATLAB - Size: 15.2 MB - Last synced at: 23 days ago - Pushed at: 7 months ago - Stars: 2 - Forks: 1
Utrosa/Thesis_scripts
Scripts used in the "Dynamic Functional Connectivity in Autism Spectrum Disorder" project.
Language: HTML - Size: 588 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
maryjis/preprocessing_fmri_dti
This repo is provided pipeline for preprocessing fmri & dti data to functional and structural connectivity matrices
Language: Jupyter Notebook - Size: 658 KB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
NeuroMET/fMRi
“Plasma p-Tau181 and GFAP track 7T MR-based changes in Alzheimer’s disease”, Göschel L, 2023
Language: Jupyter Notebook - Size: 3.8 MB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
gauravsangwan/f-MRI_Symphony
This GitHub repository contains code and data for a assignment investigating the brain's auditory networks using functional Magnetic Resonance Imaging (fMRI).
Language: MATLAB - Size: 412 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
yousef-seyfari/Computational-Neuroscience
This repository contains some codes for the computational neuroscience.
Language: Jupyter Notebook - Size: 5.01 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
james-sexton96/rsfmri_preproc
Pipeline for preprocessing resting state fMRI scans
Language: Python - Size: 1.81 MB - Last synced at: over 1 year ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0
sjburwell/fmriprep_denoising
Scripts for comparing different fmriprep denoising approaches on quality control functional connectivity (QC-FC) motion, QC-FC distance-dependence, and temporal degree of freedom loss.
Language: Python - Size: 1.91 MB - Last synced at: 8 days ago - Pushed at: over 3 years ago - Stars: 15 - Forks: 3
pabloreyesg/scripts-and-tools
Scripts in bash and python to manipulate dicom images
Language: Python - Size: 39.1 KB - Last synced at: 12 months ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
nmningmei/preprocessing_pipelines
Preprocessing Pipelines for EEG (MNE-python), fMRI (nipype), MEG (MNE-python/autoreject) data
Language: Jupyter Notebook - Size: 2.29 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 21 - Forks: 4
karnigili/Computational-Neuroscience
Using computational tools to explore the networks underlying cognitive neuroscience
Language: Jupyter Notebook - Size: 4.73 MB - Last synced at: over 1 year ago - Pushed at: over 5 years ago - Stars: 20 - Forks: 9
phildean/SPM_fMRI_Example_Pipeline
Example pipeline for preprocessing, reading in behavioural files, first level and second level analysis
Language: Matlab - Size: 702 KB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 13 - Forks: 4
ngs5/fdm
Repository for initial code behind OpenNFT's motion monitoring add-on (afterwards renamed to real-time quality assessment module (rtQA)).
Language: Python - Size: 704 KB - Last synced at: over 1 year ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0
jessedesimone/fmri_proc
shell script package for (pre)processing fmri data
Language: Shell - Size: 93.8 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
GT-EmoryMINDlab/rodent-whole-brain-preprocessing-recipe
A generally applicable whole-brain preprocessing toolbox for mice and rats
Language: MATLAB - Size: 38.7 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 4 - Forks: 3
biotechlibrary/AutismBrainSVM
This code repository contains a collection of Python scripts for classifying autistic and control conditions using Support Vector Machines (SVM), leveraging preprocessed functional MRI (fMRI) data from the ABIDE dataset.
Language: Python - Size: 257 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 4 - Forks: 0
Rutatu/experimental_methods_II
Portfolio assignments mainly focused on how the general linear model (GLM) can be used for the analysis of brain scan data. 2019 spring semester at Aarhus University
Size: 8.9 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0
Hahnnz/HCP_preproc
The HCP Pipelines product is a set of tools (primarily, but not exclusively, python3) for processing MRI image using Nipy. This repository is based on the original HPC preprocessing pipeline
Language: Python - Size: 97.7 KB - Last synced at: over 1 year ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0
noahhipp/wavepain
Code for importing/preprocessing/analysing wavepain MRI and behavioural data. And plotting routines.
Language: MATLAB - Size: 53.2 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
lab-lab/nndb
Analysis scripts and movie annotations for NNDb
Language: Shell - Size: 175 KB - Last synced at: almost 2 years ago - Pushed at: almost 4 years ago - Stars: 11 - Forks: 1
CIBIT-UC/vpmb
Public repository for code related to the VP multiband experiment/dataset.
Language: MATLAB - Size: 958 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0
harsharaman/bold5000_fmri
Implementation of LSTM and CNN models for classification of visual stimuli from fMRI data on BOLD5000 dataset
Language: Jupyter Notebook - Size: 6.37 MB - Last synced at: over 1 year ago - Pushed at: about 4 years ago - Stars: 4 - Forks: 1
dcdace/COGNESTIC-fMRI
Materials for the "fMRI analysis" workshop at the Cognitive Neuroscience Skills Training In Cambridge (COGNESTIC-2022).
Language: Jupyter Notebook - Size: 39.2 MB - Last synced at: almost 2 years ago - Pushed at: about 2 years ago - Stars: 4 - Forks: 3
alexlaurence/CLARA
🐀🧠Using Convolutional Neural Networks to Predict fMRI Noise in Rats
Language: Jupyter Notebook - Size: 16.4 MB - Last synced at: 10 days ago - Pushed at: almost 6 years ago - Stars: 5 - Forks: 1
yunfeiluo/fMRI_DTI_processing_pipelines
fMRI data processing pipelines
Language: Python - Size: 83.7 MB - Last synced at: almost 2 years ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0
chris-langfield/fslfeatsetup
Python library for setting up FEAT analyses (FSL)
Language: Python - Size: 432 KB - Last synced at: about 1 year ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0
abdullahbas/SPM_AUTO
Command line automation of SPM
Language: MATLAB - Size: 12.7 KB - Last synced at: about 2 months ago - Pushed at: almost 5 years ago - Stars: 1 - Forks: 0
aramis-lab/clinica_pipeline_fmri_preprocessing 📦
fMRI-Preprocessing pipeline used for [Guillon et al., 2019]
Language: Python - Size: 23.4 KB - Last synced at: about 2 years ago - Pushed at: about 5 years ago - Stars: 1 - Forks: 0
elayden/MRIqual
A Matlab toolbox for examining the quality of structural (SNR) and functional (tSNR, SFNR) MRI
Language: MATLAB - Size: 2.57 MB - Last synced at: about 2 years ago - Pushed at: about 5 years ago - Stars: 6 - Forks: 6
asamallab/Curvature-FCN-ASD
This repository is associated with the manuscript: “Graph Ricci Curvatures Reveal Atypical Functional Connectivity in Autism Spectrum Disorder”
Language: Python - Size: 290 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 2
brain-modelling-group/fmripop
A collection of python scripts and functions to (po)st(p)rocess fmridata, preprocessed with fmriprep
Language: Python - Size: 78.1 KB - Last synced at: almost 2 years ago - Pushed at: almost 4 years ago - Stars: 2 - Forks: 1
Robin970822/mouse-mri
preprocessing and statistical analysis for mouse MRI.
Language: MATLAB - Size: 4.93 MB - Last synced at: about 2 years ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0
PyNIPT/pynipt-plugins
Collection of Plugins for PyNIPT project
Language: Python - Size: 43 KB - Last synced at: about 2 years ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 1
htwangtw/pyretroicor
Python implementation of RETROICOR - physiology regressors for fMRI preprocessing.
Language: Python - Size: 53.7 KB - Last synced at: almost 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0
Remi-Gau/AV-Attention-7T_code
Code to run and analyse of audiovisual/attention 7T experiment
Language: MATLAB - Size: 811 KB - Last synced at: 15 days ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 1