GitHub topics: optogenetics
kristinbranson/FlyDiscoAnalysis
Modular analysis pipeline for videos of freely walking and socializing fly groups that includes keypoint tracking, behavior classification, and optogenetics-specific summary statistics and data visualization
Language: MATLAB - Size: 56.3 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 2 - Forks: 2
DeepLabCut/DeepLabCut-live
SDK for running DeepLabCut on a live video stream
Language: Python - Size: 1.94 MB - Last synced at: 4 days ago - Pushed at: 15 days ago - Stars: 206 - Forks: 51
ProjectPyRhO/PyRhO
A virtual optogenetics laboratory
Language: Python - Size: 3.8 MB - Last synced at: 6 days ago - Pushed at: almost 2 years ago - Stars: 36 - Forks: 9
siplab-gt/cleo
Closed-Loop, Electrophysiology, and Optophysiology experiment simulation testbed for mesoscale neuroscience
Language: Python - Size: 71.5 MB - Last synced at: 19 days ago - Pushed at: 19 days ago - Stars: 16 - Forks: 0
phuongho43/optopi
Modeling light inducible protein interaction systems via ODEs.
Language: Python - Size: 29.1 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0
alandolt/LITOS
LITOS - an easy-to-use tool for optogenetic cell stimulation
Language: C - Size: 36.2 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 10 - Forks: 3
jonnew/ONIX 📦
ONI-compatible hardware, firmware, and host APIs for advanced neuroscience experiments.
Language: HTML - Size: 724 MB - Last synced at: 6 months ago - Pushed at: 12 months ago - Stars: 30 - Forks: 22
arashsm79/brain-opto-fmri-decoding-gnn
Opto-fmri decoding of locus coeruleus firing patterns using Graph Neural Networks and the BrainGNN framework
Language: Jupyter Notebook - Size: 5.29 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
SynapticSage/Neural_Realime-ClosedLoop-PhaseDisruption
ryoung's closed loop module for real-time detection of theta (or beta) phase and triggering optogenetic disruption using the SpikeGadgets software environment (https://spikegadgets.com/)
Language: C++ - Size: 359 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0
mzabolocki/fusion_org_ephys
Electrophysiology analysis in ventral midbrain-striatal-cortical organoids (MISCOs) pre- and post- optogenetic stimulation.
Language: Jupyter Notebook - Size: 43.3 MB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 4 - Forks: 1
bardylab/miscos_org_ephys
Electrophysiology analysis in ventral midbrain-striatal-cortical organoids (MISCOs) pre- and post- optogenetic stimulation.
Language: Jupyter Notebook - Size: 43.6 MB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 3
antonhagser/gymnasiearbete
Optogenetic lab equipment employed for targeted diabetes research at Sahlgrenska Academy and Oxford University.
Size: 86.1 MB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
neurorishika/FlyOptoStimAnalysis
Python-based Analysis of Fruit fly decision-making data for associative learning under different reward stimulations (Turner Lab, HHMI, 2023)
Language: Jupyter Notebook - Size: 6.41 MB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
IBT-FMI/COSplay
Contrast Optimized Stimulation player
Language: Python - Size: 399 KB - Last synced at: 6 days ago - Pushed at: almost 2 years ago - Stars: 2 - Forks: 3
Karpova-Lab/cerebro
System for wireless optogenetic stimulation
Language: C++ - Size: 472 MB - Last synced at: almost 2 years ago - Pushed at: almost 3 years ago - Stars: 8 - Forks: 6
jsdpag/rt-detect
ARCADE reaction-time detection task with visual or optogenetic detection target, and online analysis of behaviour and neuronal signals.
Language: MATLAB - Size: 148 KB - Last synced at: 10 months ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0
jonnew/cyclops
Precision current source, with optional optical feedback, for driving LEDs and laser diodes
Language: C++ - Size: 428 MB - Last synced at: about 2 years ago - Pushed at: almost 4 years ago - Stars: 38 - Forks: 22
OpenBehavior/hope-recording-implant Fork of delcasso/hope
hybrid-drive for optogenetic pharmacology and electrophysiology
Size: 16.2 MB - Last synced at: about 2 years ago - Pushed at: over 6 years ago - Stars: 1 - Forks: 0
OpenBehavior/Optical-Fiber-Jig
1.25 mm ferrule optical fiber jig
Size: 2.64 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0
N0AHt/AutoMonaco
Experiment automation for Coherent's Monaco Laser
Language: Python - Size: 4.96 MB - Last synced at: almost 2 years ago - Pushed at: almost 4 years ago - Stars: 1 - Forks: 0
jvrana/OptogeneticsLightBox
A programmable light delivery box for optogenetics experiments.
Language: C++ - Size: 14.1 MB - Last synced at: over 1 year ago - Pushed at: over 5 years ago - Stars: 2 - Forks: 0
lyprince/NeuralCoding
Cortical coding study data analysis
Language: Jupyter Notebook - Size: 33.8 MB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 1
IBT-FMI/StereotaXYZ
Toolkit for the Empirical Design of Stereotactic Brain Implants
Language: Python - Size: 104 KB - Last synced at: about 1 year ago - Pushed at: about 5 years ago - Stars: 6 - Forks: 0
drbeiliu/beiliu
Bei Liu's personal website
Language: CSS - Size: 438 KB - Last synced at: almost 2 years ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0
IBT-FMI/COSgen
Contrast Optimized Stimulation generator
Language: Python - Size: 104 KB - Last synced at: about 2 years ago - Pushed at: over 7 years ago - Stars: 1 - Forks: 1