GitHub topics: brain-networks
HennyJie/BrainGB
Officially Accepted to IEEE Transactions on Medical Imaging (TMI, IF: 11.037) - Special Issue on Geometric Deep Learning in Medical Imaging.
Language: MATLAB - Size: 820 KB - Last synced at: 5 days ago - Pushed at: about 1 year ago - Stars: 192 - Forks: 41
netneurolab/netneurotools
Useful tools from the Network Neuroscience Lab
Language: Python - Size: 790 KB - Last synced at: 13 days ago - Pushed at: 4 months ago - Stars: 68 - Forks: 34
rq-Chen/rq-Chen.github.io
Ruiqi's personal website
Language: HTML - Size: 388 MB - Last synced at: 19 days ago - Pushed at: 19 days ago - Stars: 2 - Forks: 1
jcasasr/CVC_BrainNetsGNNs
we present a comparative study of various methodologies for processing brain network data with the aim of classifying subjects using Graph Neural Networks (GNNs). Specifically, we explore different strategies for constructing informative graph representations to distinguish people with multiple sclerosis (MS) from healthy controls.
Language: Python - Size: 30.3 KB - Last synced at: 29 days ago - Pushed at: 29 days ago - Stars: 0 - Forks: 0
braindynamicslab/dyneusr
Dynamical Neuroimaging Spatiotemporal Representations (DyNeuSR)
Language: Python - Size: 24.3 MB - Last synced at: 11 days ago - Pushed at: over 1 year ago - Stars: 48 - Forks: 16
cabal-cmu/Feedback-Discovery
Repository for Sanchez-Romero, R., Ramsey, J. D., Zhang, K., Glymour, M. R., Huang, B., & Glymour, C. (2019). Estimating feedforward and feedback effective connections from fMRI time series: Assessments of statistical methods. Network Neuroscience, https://doi.org/10.1162/netn_a_00061
Size: 8.79 KB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 1
brain-modelling-group/neural-flows
Estimation, analysis and decomposition of brainwave spatiotemporal dynamics
Language: MATLAB - Size: 28.9 MB - Last synced at: 12 days ago - Pushed at: almost 4 years ago - Stars: 28 - Forks: 12
favour-nerrise/xGW-GAT
An Explainable Geometric-Weighted Graph Attention Network (xGW-GAT) for Identifying Functional Networks Associated with Gait Impairment
Language: Python - Size: 70.3 KB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 13 - Forks: 2
NeuroLIAA/fmri-long-covid
fMRI data analysis of long-covid patients
Language: Python - Size: 49 MB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 0 - Forks: 0
mychan24/system-segregation-and-graph-tools
System segregation (see Chan et al. 2014 PNAS) and RSFC brain network tools
Language: MATLAB - Size: 67.4 KB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 5 - Forks: 4
HySonLab/TWGNN
Fast Temporal Wavelet Graph Neural Networks (NeurIPS 2023)
Language: Python - Size: 93.1 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 6 - Forks: 3
basiralab/4D-FedGNN-Plus
Federating temporally-varying graph timeseries
Language: Jupyter Notebook - Size: 455 MB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 6 - Forks: 3
wmotte/deaf_mst
Functional connectivity and brain networks in deaf and hearing
Language: R - Size: 1.5 MB - Last synced at: about 1 year ago - Pushed at: about 5 years ago - Stars: 1 - Forks: 0
mychan24/Chan_RSFC_Nodes
Resting-state Functional Correlation (RSFC) node set (Chan et al. 2014 PNAS)
Language: Shell - Size: 788 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 1
mychan24/r-for-brain-network
Analyze brain surface/volume (gifti, cifti, nifti) in R and extract networks
Language: HTML - Size: 203 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 10 - Forks: 3
lmeliega/MorphoConnect
MATLAB Toolbox for studying Brain Networks of anatomical/functional covariance.
Language: MATLAB - Size: 2.07 MB - Last synced at: over 1 year ago - Pushed at: about 5 years ago - Stars: 2 - Forks: 3
basiralab/BrainNet-ML-ToolBox
Python Machine Learning Toolbox for Brain Network Classification. Source codes are included of the top 20 teams in the Kaggle competition.
Language: Python - Size: 830 KB - Last synced at: over 1 year ago - Pushed at: almost 5 years ago - Stars: 36 - Forks: 11
alruizzo/interFC
Between-network functional connectivity across frequency bins described in Küchenhoff et al. (2021), European Journal of Neuroscience.
Language: MATLAB - Size: 21.5 KB - Last synced at: over 1 year ago - Pushed at: about 4 years ago - Stars: 1 - Forks: 0
alruizzo/A-MTL
Analysis scripts used to analyze the local and global functional connectivity of the medial temporal lobe including the amygdala ('A-MTL') described in Ruiz-Rizzo et al. (2020), NeuroImage.
Language: Shell - Size: 15.6 KB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0
Owen-Yang-18/BrainNN-PreTrain
Implementations for CHIL 2023 paper ''PTGB: Pre-Train Graph Neural Networks for Brain Network Analysis'' and KDD 2022 paper ''Data-Efficient Brain Connectome Analysis via Multi-Task Meta-Learning''
Language: Python - Size: 21.9 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 6 - Forks: 1
sheryl-ai/MVGCN
Multi-View Graph Convolutional Network and Its Applications on Neuroimage Analysis for Parkinson's Disease (AMIA 2018)
Language: Python - Size: 6.81 MB - Last synced at: over 1 year ago - Pushed at: about 5 years ago - Stars: 95 - Forks: 17
basiralab/DGN
How to fuse a population of graphs into a single one using graph neural networks?
Language: Python - Size: 7.69 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 16 - Forks: 10
smlacava/Horme
HORME: Handler for the Observable Rotating Motion of the Encephalos
Language: MATLAB - Size: 11.9 MB - Last synced at: over 1 year ago - Pushed at: about 3 years ago - Stars: 1 - Forks: 0
hurtb777/pyBrainNetSim
Neurobiologically inspired neural network models simulating, evolving, and solving tasks. Created to help understand the dynamic nature of neural networks and how our brain networks are able to adapt to changing stimuli
Language: Python - Size: 3.25 MB - Last synced at: almost 2 years ago - Pushed at: about 8 years ago - Stars: 0 - Forks: 1
braindynamicslab/neumapper
A scalable Mapper algorithm for neuroimaging data analysis
Language: MATLAB - Size: 16 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 4 - Forks: 0
sheryl-ai/MemGCN
Integrative Analysis of Patient Health Records and Neuroimages via Memory-based Graph Convolutional Network (ICDM 2018 full paper)
Language: Python - Size: 13.6 MB - Last synced at: over 1 year ago - Pushed at: about 6 years ago - Stars: 45 - Forks: 18
laplcebeltrami/sphericalMDS
Embedding of Functional Human Brain Networks on a Sphere
Language: MATLAB - Size: 21.8 MB - Last synced at: about 2 years ago - Pushed at: almost 3 years ago - Stars: 1 - Forks: 0
basiralab/MGN-Net
MGN-Net: A novel Graph Neural Network for integrating heterogenous graph population derived from multiple sources.
Language: Python - Size: 6.63 MB - Last synced at: about 2 years ago - Pushed at: almost 3 years ago - Stars: 6 - Forks: 4
basiralab/FS-Select
FS-Select identifies the best feature selection (FS) method for a given dataset from a pool of FS methods.
Language: Jupyter Notebook - Size: 1.2 MB - Last synced at: about 2 years ago - Pushed at: almost 5 years ago - Stars: 6 - Forks: 2
basiralab/MultigraphGNet
Predicting multigraph brain population from a single graph
Language: Python - Size: 2.39 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 5 - Forks: 1
basiralab/ABMT
ABMT (Adversarial Brain Multiplex Translator) for brain graph translation using geometric generative adversarial network (gGAN).
Language: Python - Size: 17.7 MB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 6 - Forks: 2
basiralab/L2S-KDnet
L2S-KDNet for super-resolving brain graphs using teacher-student network
Language: Python - Size: 11.9 MB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 2 - Forks: 1
laplcebeltrami/orderstat
Topological data analysis of brain networks through order statistics
Language: MATLAB - Size: 13 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 1
ColeLab/ActFlowCategories
Publicly available code for "Distributed network processes account for the majority of variance in localized visual category selectivity", Cocuzza et al., 2022.
Language: Jupyter Notebook - Size: 477 MB - Last synced at: almost 2 years ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0
basiralab/netNorm-PY
netNorm (network normalization) framework for multi-view network integration (or fusion), recoded up in Python by Ahmed Nebli.
Language: Python - Size: 1.14 MB - Last synced at: about 2 years ago - Pushed at: almost 5 years ago - Stars: 5 - Forks: 2
basiralab/TIS-Net
Intermodalitty graph superresolution.
Language: Python - Size: 20.6 MB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 2
M-torki/NeuroMLNet
Autism classifier using fMRI networks and Structural Balance Theory features
Language: Jupyter Notebook - Size: 167 KB - Last synced at: 6 months ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0
basiralab/IMANGraphNet
Non-isomorphic Inter-modality Graph Alignment and Synthesis.
Language: Python - Size: 1.48 MB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 1
basiralab/RESNets
Residual Embedding Similarity-based Network Selection (RESNets) for forecasting network dynamics.
Language: Python - Size: 1.23 MB - Last synced at: about 2 years ago - Pushed at: almost 4 years ago - Stars: 3 - Forks: 2
brain-modelling-group/stochastic-sync
Code supporting 'Stochastic synchronization of dynamics on the human connectome'
Language: MATLAB - Size: 1.26 GB - Last synced at: over 1 year ago - Pushed at: almost 4 years ago - Stars: 3 - Forks: 4
basiralab/SM-netFusion
SM-NetFusion for supervised multi-topology network cross-diffusion.
Language: MATLAB - Size: 127 MB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 2 - Forks: 2
MateJozsaPhys/CNDinvestigation
Opportunities and challenges in partitioning the graph measure space of real-world networks
Language: Jupyter Notebook - Size: 7.82 MB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0
brain-modelling-group/geomsurr Fork of breakspear/geomsurr
Generate random surrogate weighted networks that preserve the effect of distance on the weights.
Language: MATLAB - Size: 2.93 KB - Last synced at: almost 2 years ago - Pushed at: over 8 years ago - Stars: 1 - Forks: 1