Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub topics: ppi-networks
a-r-j/graphein
Protein Graph Library
Language: Jupyter Notebook - Size: 87.8 MB - Last synced: 18 days ago - Pushed: 28 days ago - Stars: 987 - Forks: 122
LirongWu/MAPE-PPI
Code for ICLR 2024 (Spotlight) paper "MAPE-PPI: Towards Effective and Efficient Protein-Protein Interaction Prediction via Microenvironment-Aware Protein Embedding"
Language: Python - Size: 6.81 MB - Last synced: 18 days ago - Pushed: 3 months ago - Stars: 158 - Forks: 28
pievos101/Ensemble-GNN
Ensemble learning with graph neural networks for disease module discovery and classification
Language: Python - Size: 992 KB - Last synced: 25 days ago - Pushed: 7 months ago - Stars: 9 - Forks: 1
sevmardi/Protein-Protein-Networks
Evaluate a strategy for predicting cancer-related proteins in PPI networks.
Language: Python - Size: 1.18 MB - Last synced: 6 months ago - Pushed: over 6 years ago - Stars: 1 - Forks: 3
sysbiolux/MD_network_map
Language: Python - Size: 2.42 MB - Last synced: 3 months ago - Pushed: about 4 years ago - Stars: 0 - Forks: 0
Barabasi-Lab/NonCoding
Codes for the paper entitled: Non-Coding RNAs Improve the Predictive Power of Network Medicine
Language: HTML - Size: 73 MB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 0 - Forks: 0
ylaboratory/splitpea
A tool for calculating PPI network rewiring due to alternative splicing
Language: Jupyter Notebook - Size: 20.9 MB - Last synced: 4 months ago - Pushed: 5 months ago - Stars: 0 - Forks: 0
ylaboratory/ETNA
Embeddings to Network Alignment - align biological networks between two species
Language: Python - Size: 1.69 MB - Last synced: 7 months ago - Pushed: 9 months ago - Stars: 8 - Forks: 4
THinnerichs/DTI-VOODOO
A PPI network driven approach to drug-target-interaction prediction using deep graph learning methods.
Language: TeX - Size: 406 MB - Last synced: 9 months ago - Pushed: over 2 years ago - Stars: 9 - Forks: 0
chao1224/SGNN-EBM
Structured Multi-task Learning for Molecular Property Prediction, AISTATS'22 (https://proceedings.mlr.press/v151/liu22e.html)
Language: Python - Size: 468 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 8 - Forks: 0
aGalhoz/wppi
Gene prioritisation tool using a weighted network methodology based on Gene Ontology and Human Phenotype Ontology annotations to infer closely related genes to given genes of interest.
Language: R - Size: 1.78 MB - Last synced: 6 months ago - Pushed: over 1 year ago - Stars: 2 - Forks: 0
paulmorio/protclus
Python 3 library implementing a number of topological clustering techniques used on protein-protein interaction networks.
Language: Python - Size: 1.06 MB - Last synced: 4 months ago - Pushed: over 3 years ago - Stars: 9 - Forks: 2
MateJozsaPhys/CNDinvestigation
Opportunities and challenges in partitioning the graph measure space of real-world networks
Language: Jupyter Notebook - Size: 7.82 MB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0