ReproNim/neurodocker

Generate custom Docker and Singularity images, and minimize existing containers

Language: Python - Size: 8.35 MB - Last synced at: about 17 hours ago - Pushed at: 2 days ago - Stars: 341 - Forks: 97

Macatools/macapype

PNH segmentation pipelines based on nipype

Language: Python - Size: 71.7 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 22 - Forks: 13

dPys/PyNets

A Reproducible Workflow for Structural and Functional Connectome Ensemble Learning

Language: Python - Size: 1010 MB - Last synced at: 15 days ago - Pushed at: over 1 year ago - Stars: 122 - Forks: 41

pni-lab/PUMI

PUMI: neuroimaging Pipelines Using Modular workflow Integration

Language: Python - Size: 34.6 MB - Last synced at: 21 days ago - Pushed at: 21 days ago - Stars: 1 - Forks: 0

nipreps/eddymotion 📦

Open-source eddy-current and head-motion correction for dMRI.

Language: Python - Size: 15.1 MB - Last synced at: 17 days ago - Pushed at: 4 months ago - Stars: 17 - Forks: 16

NatLee/nipype-preprocess-on-brain-MR

The project is used to do preprocessing on brain MR images by using Nipype.

Language: Python - Size: 3.63 MB - Last synced at: about 1 month ago - Pushed at: 11 months ago - Stars: 36 - Forks: 7

Medical-Image-Analysis-Laboratory/mialsuperresolutiontoolkit

The Medical Image Analysis Laboratory Super-Resolution ToolKit (MIALSRTK) consists of a set of C++ and Python processing and workflow tools necessary to perform motion-robust super-resolution fetal MRI reconstruction in the BIDS Apps framework.

Language: C++ - Size: 310 MB - Last synced at: 18 days ago - Pushed at: over 1 year ago - Stars: 29 - Forks: 13

Neurita/pypes

Reusable neuroimaging pipelines using nipype

Language: Python - Size: 4.37 MB - Last synced at: 15 days ago - Pushed at: almost 6 years ago - Stars: 17 - Forks: 7

neuropycon/ephypype

Neuropycon package of functions for electrophysiology analysis, can be used from graphpype and nipype

Language: Python - Size: 27.4 MB - Last synced at: 4 days ago - Pushed at: over 2 years ago - Stars: 26 - Forks: 14

tsalo/complex-flow 📦

Initial work on a complex-valued fMRI preprocessing workflow. Dropped in favor of fMRIPost-phase.

Language: Python - Size: 70.3 KB - Last synced at: 16 days ago - Pushed at: 9 months ago - Stars: 1 - Forks: 0

miykael/nipype-beginner-s-guide

Beginner's guide for Nipype

Language: Python - Size: 113 MB - Last synced at: 15 days ago - Pushed at: over 2 years ago - Stars: 37 - Forks: 33

brainhack-ch/superres-mri

Portable, modular, reusable, and reproducible processing pipeline software for fetal brain MRI super-resolution

Language: Jupyter Notebook - Size: 13 MB - Last synced at: about 1 month ago - Pushed at: over 5 years ago - Stars: 5 - Forks: 1

nmningmei/preprocessing_pipelines

Preprocessing Pipelines for EEG (MNE-python), fMRI (nipype), MEG (MNE-python/autoreject) data

Language: Jupyter Notebook - Size: 2.29 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 21 - Forks: 4

txrunn/jupyter-purcell

An innovative and collaborative solution for setting up and executing Jupyter Notebooks on High-Performance Computing (HPC) clusters, tailored for neuroscience data processing workflows.

Language: Shell - Size: 23.4 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 1

andrewrosss/nipype-generate-fieldmaps

Nipype workflow to generate fieldmaps from EPI acquisitions with differing phase-encoding directions

Language: Python - Size: 175 KB - Last synced at: 3 days ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0

rmukh/basicregistrationMRIpipeline

The basic structural and diffusion MRI registration with pre-processing pipeline in Python.

Language: Python - Size: 70.3 KB - Last synced at: almost 2 years ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

JohannesWiesner/csp_docker

A repository for creating Docker and Singularity files using Neurodocker

Language: Dockerfile - Size: 53.7 KB - Last synced at: 5 days ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 1

Neurita/neuro_docker

A Dockerfile to create a Ubuntu docker for neuroimaging

Language: Shell - Size: 92.8 KB - Last synced at: about 2 months ago - Pushed at: over 6 years ago - Stars: 10 - Forks: 5

p3proc/p3 📦

An extensible fMRI Preprocessing Pipeline in nipype based on a 2015 Jonathan Power Pipeline

Language: Python - Size: 4.73 MB - Last synced at: 4 days ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0

spisakt/PUMI

Pypelines Utilizing a Modular Inventory

Language: Python - Size: 2.45 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 4 - Forks: 2

axiezai/pipetography

Nipype and tractography!

Language: Jupyter Notebook - Size: 64.2 MB - Last synced at: 5 days ago - Pushed at: almost 3 years ago - Stars: 4 - Forks: 2

schluppeck/dockerize-analysis

build a container from which EH's analysis code (and others) can be run, without relying on windows/mac compatibility

Language: Dockerfile - Size: 1.45 MB - Last synced at: about 2 months ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 1

andrewrosss/nipype-fsl-anat

Nipype interface(s) wrapping the fsl_anat command line tool

Language: Python - Size: 58.6 KB - Last synced at: about 1 month ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 1

jrasero/my-nipype-pipelines

Some pipelines implemented with nipype.

Language: Jupyter Notebook - Size: 352 KB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 2

jscanass/dwi_processing

Language: Jupyter Notebook - Size: 3.17 MB - Last synced at: about 2 years ago - Pushed at: about 6 years ago - Stars: 0 - Forks: 0

labhstats/mri-prepro-nipype

Language: Python - Size: 1.54 MB - Last synced at: over 1 year ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 0

mobatusi/BrainHack2017

A summary of topics covered by the Nipype workshop and hackweek

Size: 1000 Bytes - Last synced at: about 2 years ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 0