GitHub topics: brain-segmentation

Repositories

ENHANCE-PET/MOOSE

MOOSE (Multi-organ objective segmentation) a data-centric AI solution that generates multilabel organ segmentations to facilitate systemic TB whole-person research.The pipeline is based on nn-UNet and has the capability to segment 120 unique tissue classes from a whole-body 18F-FDG PET/CT image.

Language: Python - Size: 44.8 MB - Last synced at: 1 day ago - Pushed at: 1 day ago - Stars: 235 - Forks: 32

Macatools/macapype

PNH segmentation pipelines based on nipype

Language: Python - Size: 71.5 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 22 - Forks: 13

freesurfer/samseg

Sequence Adaptive Multimodal SEGmentation (SAMSEG)

Language: C++ - Size: 81.1 MB - Last synced at: 15 days ago - Pushed at: 15 days ago - Stars: 10 - Forks: 5

NYUMedML/DARTS

Code for DARTS: DenseUnet-based Automatic Rapid Tool for brain Segmentation

Language: Jupyter Notebook - Size: 37.8 MB - Last synced at: 16 days ago - Pushed at: over 1 year ago - Stars: 69 - Forks: 24

peirong26/Brain-ID

[ECCV 2024] Brain-ID: Learning Contrast-agnostic Anatomical Representations for Brain Imaging

Language: Python - Size: 2.22 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 24 - Forks: 5

NatLee/nipype-preprocess-on-brain-MR

The project is used to do preprocessing on brain MR images by using Nipype.

Language: Python - Size: 3.63 MB - Last synced at: 19 days ago - Pushed at: 10 months ago - Stars: 36 - Forks: 7

CSIM-Toolkits/SlicerBrainVolumeRefinement

3D Slicer extension for the Brain Volume Refinement methods (BVeR)

Language: C++ - Size: 2.21 MB - Last synced at: 3 days ago - Pushed at: 4 months ago - Stars: 0 - Forks: 2

CSIM-Toolkits/Slicer-LesionSpotlightExtension

3D Slicer extension that provides T2-FLAIR MRI manipulation methods in order to increase contrast and segment hyperintense Multiple Sclerosis lesions

Language: Python - Size: 15.8 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 2 - Forks: 2

CindyZJT/UMM-Net

Language: Python - Size: 771 KB - Last synced at: 12 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0

koriavinash1/DeepBrainSeg

Fully automatic brain tumour segmentation using Deep 3-D convolutional neural networks

Language: Python - Size: 287 MB - Last synced at: 12 months ago - Pushed at: over 1 year ago - Stars: 180 - Forks: 43

AICONSlab/iCVMapp3r

AICONSlab's brain extraction (skull-stripping) algorithm using CNNs

Language: Python - Size: 375 MB - Last synced at: 12 months ago - Pushed at: 12 months ago - Stars: 16 - Forks: 2

volBrain/AssemblyNet

AssemblyNet: 3D Whole Brain MRI segmentation pipeline

Size: 53.4 MB - Last synced at: over 1 year ago - Pushed at: almost 2 years ago - Stars: 34 - Forks: 6

ai-med/QuickNATv2

Fast Whole Brain Segmentation (Layers, codes and Pre-trained Models)

Language: MATLAB - Size: 41.9 MB - Last synced at: over 1 year ago - Pushed at: about 6 years ago - Stars: 60 - Forks: 16

CRazorback/OHSR

[MICCAI'23] "Learning Ontology-Based Hierarchical Structural Relationship for Whole Brain Segmentation".

Language: Python - Size: 19.5 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 0

quqixun/BrainPrep 📦

Preprocessing pipeline on Brain MR Images through FSL and ANTs, including registration, skull-stripping, bias field correction, enhancement and segmentation.

Language: Python - Size: 43.7 MB - Last synced at: over 1 year ago - Pushed at: almost 7 years ago - Stars: 172 - Forks: 51

MaciejMazurowski/brain-segmentation

Deep learning based skull stripping and FLAIR abnormality segmentation in brain MRI using U-Net

Language: Python - Size: 13.9 MB - Last synced at: over 1 year ago - Pushed at: over 5 years ago - Stars: 114 - Forks: 50

josedolz/LiviaNET

This repository contains the code of LiviaNET, a 3D fully convolutional neural network that was employed in our work: "3D fully convolutional networks for subcortical segmentation in MRI: A large-scale study"

Language: Python - Size: 12.1 MB - Last synced at: over 1 year ago - Pushed at: over 5 years ago - Stars: 160 - Forks: 52

josedolz/HyperDenseNet

This repository contains the code of HyperDenseNet, a hyper-densely connected CNN to segment medical images in multi-modal image scenarios.

Language: Python - Size: 820 KB - Last synced at: over 1 year ago - Pushed at: over 5 years ago - Stars: 144 - Forks: 41

SiyangJ/MacaqueSeg

Macaca Mulatta brain tissue segmentation project with prof. Martin Styner.

Size: 1.95 KB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0

Vivikar/brain-segmentation

This repository contrains source code and the report for the Brain Segmentation challenge. It was the final assignment for the Medical Image Segmentation and Analysis course at the University of Girona for the MAIA programme.

Language: Jupyter Notebook - Size: 14.1 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 3 - Forks: 1