GitHub topics: neuroanatomy-toolbox
morphonets/SNT Fork of fiji/SNT
The ImageJ framework for quantification of neuronal anatomy
Language: Java - Size: 45.6 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 52 - Forks: 19
natverse/nat.nblast
R package implementing the NBLAST neuron search algorithm, as an add-on for the NeuroAnatomy Toolbox (nat) R package.
Language: R - Size: 6.55 MB - Last synced at: 17 days ago - Pushed at: 17 days ago - Stars: 16 - Forks: 6
natverse/nat.templatebrains
Support for 3D template brains used as targets for image registration
Language: R - Size: 713 KB - Last synced at: 17 days ago - Pushed at: 17 days ago - Stars: 3 - Forks: 0
natverse/neuprintr
R client utilities for interacting with the neuPrint connectome analysis service
Language: R - Size: 20.3 MB - Last synced at: 18 days ago - Pushed at: 18 days ago - Stars: 4 - Forks: 3
natverse/nat
NeuroAnatomy Toolbox: An R package for the (3D) visualisation and analysis of biological image data, especially tracings of single neurons.
Language: R - Size: 61.2 MB - Last synced at: 26 days ago - Pushed at: 26 days ago - Stars: 69 - Forks: 27
natverse/fafbseg
Support functions for analysis of Drosophila connectomes especially the FAFB-FlyWire whole brain
Language: R - Size: 54.5 MB - Last synced at: 26 days ago - Pushed at: 26 days ago - Stars: 9 - Forks: 5
natverse/coconatfly
Comparative Connectomics of Public and In Progress Drosophila Datasets
Language: R - Size: 14.3 MB - Last synced at: 21 days ago - Pushed at: 21 days ago - Stars: 7 - Forks: 2
natverse/nat.utils
R package providing utility functions in support of NeuroAnatomy Toolbox (nat)
Language: R - Size: 376 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 1
natverse/nat.jrcbrains
Janelia Research Campus Bridging Registrations for Drosophila Brains
Language: R - Size: 10.7 MB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
natverse/nat.h5reg
Neuroanatomy Toolbox Support for Saalfeld/Bogovic HDF5 Registration Format
Language: R - Size: 39.8 MB - Last synced at: over 1 year ago - Pushed at: almost 2 years ago - Stars: 1 - Forks: 0
natverse/flycircuit
R package flycircuit
Language: R - Size: 14.2 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 4 - Forks: 2
jefferislab/LHlibrary
A R Shiny app for sharing and viewing lateral horn data
Language: R - Size: 422 MB - Last synced at: about 2 months ago - Pushed at: over 6 years ago - Stars: 2 - Forks: 1
jefferis/nat.ants
Bridge neuroanatomy toolbox ('nat') and 'ANTs' registration tools
Language: R - Size: 10.7 KB - Last synced at: 6 months ago - Pushed at: almost 2 years ago - Stars: 1 - Forks: 0
flyconnectome/tracerutils
R tools for EM tracers
Language: R - Size: 225 KB - Last synced at: almost 2 years ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 1
ai-med/QuickNATv2
Fast Whole Brain Segmentation (Layers, codes and Pre-trained Models)
Language: MATLAB - Size: 41.9 MB - Last synced at: almost 2 years ago - Pushed at: over 6 years ago - Stars: 60 - Forks: 16
natverse/elmr
Support for working with light and electron microscopy fly brain data
Language: R - Size: 70 MB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 7 - Forks: 3
morphonets/cx3d
The Cx3D modeling framework in SciView and SNT
Language: Java - Size: 2.97 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 1
natverse/mouselightr
Bridge HHMI Janelia MouseLight Database and nat R Package
Language: R - Size: 1.43 MB - Last synced at: over 1 year ago - Pushed at: about 5 years ago - Stars: 9 - Forks: 2
natverse/rcatmaid
R package providing API access to the CATMAID web image annotation tool
Language: R - Size: 7.85 MB - Last synced at: over 1 year ago - Pushed at: about 3 years ago - Stars: 8 - Forks: 6
natverse/nat.flybrains
Support for Drosophila bridging/mirroring registrations in R
Language: Haxe - Size: 31.2 MB - Last synced at: 2 months ago - Pushed at: about 3 years ago - Stars: 2 - Forks: 3
natverse/natcpp
Fast C++ functions for computational neuroanatomy
Language: C++ - Size: 239 KB - Last synced at: 18 days ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 1
natverse/drvid
Access to DVID API
Language: R - Size: 97.7 KB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 2
jefferis/r-natverse
Batteries included docker image for full natverse
Language: Dockerfile - Size: 9.77 KB - Last synced at: 6 months ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 1
jefferis/nat.amira
Interface Between NeuroAnatomy Toolbox and Amira Visualisation Software
Language: R - Size: 952 KB - Last synced at: 6 months ago - Pushed at: about 6 years ago - Stars: 0 - Forks: 0