GitHub topics: pydicom
Anderson-Barcellos/Dicom-PDF
This module is designed to streamline the process of handling medical images by automating the download of DICOM files from an Orthanc server, converting these files into standard image formats, and compiling the images into a grid layout within a PDF document.
Language: Python - Size: 6.31 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 2 - Forks: 1

brainrot69420/medical-image-converter
# ⚙ medical-image-converterThis script converts DICOM files to JPG, PNG, or TIFF formats, allowing for batch processing and customizable output. It logs conversions and errors, ensuring a smooth experience for users. 🖼️✨
Language: Python - Size: 30.9 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 0 - Forks: 0

aignostics/python-sdk
🔬 Python SDK providing access to the Aignostics Platform. Includes Aignostics Launchpad (Desktop Application), Aignostics CLI (Command-Line Interface), example notebooks, and Aignostics Client Library.
Language: Python - Size: 55.9 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 6 - Forks: 0

rmsandu/segmentation-eval
Extract and evaluate radiomics for liver cancer tumors from DICOM segmentation masks. Using SimpleITK, PyRadiomics and PyDicom.
Language: Python - Size: 1.44 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 24 - Forks: 5

pydicom/pylibjpeg
A Python framework for decoding JPEG images, with a focus on supporting pydicom
Language: Python - Size: 50 MB - Last synced at: 3 days ago - Pushed at: 7 months ago - Stars: 48 - Forks: 4

ImagingDataCommons/highdicom
High-level DICOM abstractions for the Python programming language
Language: Python - Size: 7.47 MB - Last synced at: about 12 hours ago - Pushed at: about 13 hours ago - Stars: 197 - Forks: 45

radtorch/radtorch
Official repository for RADTorch - The Medical Imaging Machine Learning Framework
Language: Python - Size: 13.8 MB - Last synced at: 1 day ago - Pushed at: 10 months ago - Stars: 22 - Forks: 6

pydicom/pynetdicom
A Python implementation of the DICOM networking protocol
Language: Python - Size: 63.6 MB - Last synced at: 1 day ago - Pushed at: 9 days ago - Stars: 542 - Forks: 186

qurit/rt-utils
A minimal Python library to facilitate the creation and manipulation of DICOM RTStructs.
Language: Python - Size: 3.1 MB - Last synced at: 5 days ago - Pushed at: 3 months ago - Stars: 234 - Forks: 64

pydicom/pydicom
Read, modify and write DICOM files with python code
Language: Python - Size: 119 MB - Last synced at: 15 days ago - Pushed at: 15 days ago - Stars: 2,014 - Forks: 504

aleferrariuy/medical-image-converter
Converts a DICOM file or directory of files to JPG, PNG, or TIFF files
Language: Python - Size: 31 MB - Last synced at: 21 days ago - Pushed at: 21 days ago - Stars: 1 - Forks: 0

pydicom/deid
best effort anonymization for medical images using python
Language: Python - Size: 88.4 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 160 - Forks: 49

a-parida12/pdf2dcm
Python Package for PDF to DICOM Conversion
Language: Python - Size: 1.18 MB - Last synced at: 25 days ago - Pushed at: 3 months ago - Stars: 24 - Forks: 4

ImagingDataCommons/dicomweb-client
Python client for DICOMweb RESTful services
Language: Python - Size: 416 KB - Last synced at: 29 days ago - Pushed at: about 1 month ago - Stars: 121 - Forks: 40

py-baudin/dicomstack
A `pydicom` wrapper for simple loading and handling DICOM stacks
Language: Python - Size: 10.9 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 1 - Forks: 0

pydicom/pylibjpeg-openjpeg
A J2K, JP2 and HTJ2K plugin for pylibjpeg
Language: Python - Size: 403 KB - Last synced at: 7 days ago - Pushed at: 7 months ago - Stars: 22 - Forks: 4

cutright/DVH-Analytics 📦
A DICOM Database Application for Radiation Oncology
Language: Python - Size: 39.3 MB - Last synced at: 15 days ago - Pushed at: over 3 years ago - Stars: 85 - Forks: 33

pydicom/pylibjpeg-rle
Fast DICOM RLE plugin for pylibjpeg
Language: Python - Size: 133 KB - Last synced at: 27 days ago - Pushed at: about 2 months ago - Stars: 6 - Forks: 2

davidj-brewster/autoneurosegment
DiCOM to NiFTI processing pipeline orchestration, combining multiple planes via ANTs to maximise resolution and suitability for clustering and post-processing
Language: Shell - Size: 272 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 1 - Forks: 0

pydicom/dicom-database
a Dockerized storage and send/receiver for dicom images, intended to easily work with pydicom/dicom-datasets
Language: CSS - Size: 5.02 MB - Last synced at: 21 days ago - Pushed at: almost 8 years ago - Stars: 15 - Forks: 6

kelvinleandro/lung-segmentation-server Fork of ProjetoFinalPDI/backend
A FastAPI server for automatic lung segmentation from DICOM files
Language: Python - Size: 93 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

TankEngine-ish/ct_scan_human_organs_monai_segmentation
AI powered segmentation of human organs from CT images
Language: Jupyter Notebook - Size: 3.36 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 1 - Forks: 1

ericspod/DicomBrowser
Lightweight portable Dicom browser application
Language: Python - Size: 1.05 MB - Last synced at: about 1 month ago - Pushed at: 4 months ago - Stars: 27 - Forks: 6

cutright/DVHA-DICOM-Editor 📦
Simple DICOM tag editor built with wxPython and pydicom
Language: Python - Size: 1.21 MB - Last synced at: 15 days ago - Pushed at: about 4 years ago - Stars: 13 - Forks: 5

pydicom/dicom-containers
singularity and Docker containers to easily get started with common dicom tools
Language: Dockerfile - Size: 31.3 KB - Last synced at: 3 months ago - Pushed at: about 5 years ago - Stars: 22 - Forks: 1

tdiprima/dicom-utils
Decompressing, converting, extracting metadata, and processing DICOM medical imaging files.
Language: Python - Size: 104 KB - Last synced at: about 1 month ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0

junjslee/dicom2png
A simple Python tool to convert DICOM files to PNG images.
Language: Python - Size: 1.95 KB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0

tdiprima/dicom-image-converter
DICOM JPEG Decoding
Language: Java - Size: 22.5 KB - Last synced at: 22 days ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0

GSTT-CSC/XNAT
Tracks general documentation, standard operating procedures (SOP) and helper scripts for XNAT.
Language: Python - Size: 2.68 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 16 - Forks: 0

pawelzeja098/DICOM_To_PNG
Convert dicom file to png files.
Language: Python - Size: 717 KB - Last synced at: 3 months ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 0

pydicom/pylibjpeg-libjpeg
A JPEG, JPEG-LS and JPEG XT plugin for pylibjpeg
Language: Python - Size: 383 KB - Last synced at: 2 days ago - Pushed at: 7 months ago - Stars: 16 - Forks: 7

rxxbyy/dicom2png
Convert multiple DICOM format images to PNG in parallel using MPI.
Language: Python - Size: 163 KB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 1 - Forks: 1

RSIP-Vision/medio
Medical images I/O python package
Language: Python - Size: 160 KB - Last synced at: 23 days ago - Pushed at: over 2 years ago - Stars: 34 - Forks: 5

ChairChandler/Computer-Tomography-Simulation
Computer Tomography simulation using radon transform.
Language: Python - Size: 2.05 MB - Last synced at: 4 months ago - Pushed at: about 5 years ago - Stars: 3 - Forks: 1

pydicom/contrib-pydicom 📦
contributions to the core pydicom base, including tutorials, extra plugins, etc.
Language: Python - Size: 85.9 KB - Last synced at: 8 months ago - Pushed at: 12 months ago - Stars: 55 - Forks: 56

cyrilzakka/Phantom
Effective DICOM anonymization in Python
Language: Python - Size: 2.28 MB - Last synced at: 3 months ago - Pushed at: over 2 years ago - Stars: 4 - Forks: 1

AdamPiszczek/rt-struct-ct-visualization
App handles GUI creation and image processing from DICOM files. Built using the PyQt5 library, it facilitates an interface with buttons and functions
Language: HTML - Size: 1.14 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

Dr-Machine/backend
Backend for Dr. Machine
Language: Python - Size: 87.9 KB - Last synced at: about 1 year ago - Pushed at: almost 4 years ago - Stars: 1 - Forks: 1

Dr-Machine/ai_corona
Radiologist-Assistant Deep Learning Framework for COVID-19 Diagnosis in Chest CT Scans
Language: Python - Size: 15.6 KB - Last synced at: about 1 year ago - Pushed at: almost 4 years ago - Stars: 2 - Forks: 0

yjg30737/pyqt-dicom-viewer
DICOM file viewer powered by PyQt
Language: Python - Size: 4.63 MB - Last synced at: about 1 month ago - Pushed at: over 1 year ago - Stars: 3 - Forks: 0

mpierangeli/PEFI-Prostate_Cancer_MRI
Trabajo desarrollado para beca PEFI 2022: Software SAURUS para visualización, análisis y generación de informes automáticos de cancer prostático a partir de imágenes de MRI
Language: Python - Size: 27.2 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0

cwverhey/DICOMwaterequivalent
calculates water equivalent area (Aw) and water equivalent circle diameter (Dw) for CT DICOM images, per AAPM 204 and AAPM 220
Language: Python - Size: 1.16 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 6 - Forks: 0

rohantuli7/MedicalImageSegmentation
DICOM image segmentation implementation
Language: Jupyter Notebook - Size: 1.93 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0

gywlsdms123/DicomAnonymizerTool
Dicom Anonymized Tool
Language: Python - Size: 17.6 KB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 2 - Forks: 0

labhstats/mri_sort_filter_convert
Language: Python - Size: 56.6 KB - Last synced at: over 1 year ago - Pushed at: about 7 years ago - Stars: 0 - Forks: 0

jaimeh94/Point-Dose-Calculation_TG-43
Module tg43 in python to do a manual calculation of point dose in base of TG-43 from AAPM, in two ways: using a dcm file as input and input the data manually. Also there is a desktop app to do this more friendly.
Language: Python - Size: 61.5 KB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 4 - Forks: 0

brykov93/DICOMServer
Поиск исследований КТ в ПАКС (Комета) по заданным критериям, их получение и отправка не сервер обработки + Программа визуализация обработанных данных
Language: Python - Size: 8.79 KB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 0

brykov93/DICOMLocal
Поиск файлов исследований КТ по заданным параметрам (в примере- исследования легких), их копирование и анонимизация, а так же отправка на сервер обработки и получение результатов с уведомлением по электронной почте.
Language: Python - Size: 7.81 KB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

fpaupier/cancerous_cells_scans_processing 📦
Predict survival time from PET scans
Language: Python - Size: 30.3 MB - Last synced at: about 1 year ago - Pushed at: over 5 years ago - Stars: 9 - Forks: 6

pyb0924/MyPACS
MyPACS
Language: C# - Size: 3.57 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 4 - Forks: 4

amaljova/DicomDatabase
This script reads DICOM files in a source directory or in a list of source directories and searches for the patients in the given patients' list creates a DICOM DataBase in the destination directory, copies the files, and creates a DicomDataBase.csv file and a summary.txt file.
Language: Python - Size: 1.95 KB - Last synced at: almost 2 years ago - Pushed at: over 3 years ago - Stars: 2 - Forks: 0

SylwiaNowakowska/Pneumonia_Detection_from_Chest_X_rays
Classification of chest X-rays as pneumonia positive or negative with the use of convolutional neural networks based on DenseNet121.
Language: Jupyter Notebook - Size: 31.3 MB - Last synced at: almost 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 1

SylwiaNowakowska/Hippocampus_Segmentation_for_Alzheimer-s_Progression Fork of udacity/nd320-c3-3d-imaging-starter
U-Net algorithm for segmentation of Hippocampus from MRI brain scans for quantification of Alzheimer's Disease Progression.
Language: Jupyter Notebook - Size: 176 MB - Last synced at: almost 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

chris201706/PyEQD2
Convert DICOM-RT dose matrices to EQD2 via Python
Language: Python - Size: 254 KB - Last synced at: over 1 year ago - Pushed at: about 4 years ago - Stars: 12 - Forks: 5

ctsit/polyjuice Fork of naomidb/polyjuice
Anonymize dicom files
Language: Python - Size: 91.8 MB - Last synced at: almost 2 years ago - Pushed at: almost 3 years ago - Stars: 2 - Forks: 2

JeisonPacateque/Asphalt-Mixtures-Aging-Simulator
This project performs a 3D reconstruction of a cylindrical asphalt mixture sample from a set images on a Dicom file format. The components of asphalt mixture will be identified through 3-phase segmentation. Additionally, a 3D model of the asphalt mixture reconstruction was developed. The project was implemented on the Python programming language using the open-source libraries Numpy, Scipy, Pydicom, Scikit-learn, Matplotlib and Mayavi. A simulation of the asphalt mixtures aging process is implemented using numerical methods on the mechanical, themical and chemical fields.
Language: Python - Size: 750 KB - Last synced at: almost 2 years ago - Pushed at: over 7 years ago - Stars: 2 - Forks: 3

JacobJ215/Pneumonia-Classification
Developed and evaluated two models, to detect pneumonia cases from medical images. The custom resnet18 outperformed the custom classifier with an 81% accuracy, 66% precision, and 78% recall. Valuable for timely detection of pneumonia patients, improving outcomes, and reducing mortality. CAM visualizations provide
Language: Jupyter Notebook - Size: 5.75 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

HelenaMaslowska/Tomograph
Tomograph - Radon transform experiment.
Language: Jupyter Notebook - Size: 13.7 MB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

kirubel606/Dicom-to-Jpg
This is a Python script that converts DICOM files to JPEG files using the Pydicom and Pillow libraries
Language: Python - Size: 16.6 KB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

mpierangeli/PFI
Proyecto Final Integrador Ingeniería Biomédica - Deep Learning para segmentación y clasificación de imágenes médicas
Language: Jupyter Notebook - Size: 107 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

nigelreign/PACS-Server
A python PACS server which runs on port 11112 and can be linked to other H.I.S like Orthanc
Language: Python - Size: 1000 KB - Last synced at: over 2 years ago - Pushed at: over 3 years ago - Stars: 6 - Forks: 0

nigelreign/converting-pdf-to-dcm
Python script to convert a pdf file to a dicom image
Language: Python - Size: 1.95 KB - Last synced at: over 2 years ago - Pushed at: over 3 years ago - Stars: 5 - Forks: 1

twweeb/Biomedical-Image-Analysis 📦
Courseworks of CS5550 Computational Methods for Biomedical Image Analysis, NTHU.
Language: Python - Size: 1.15 MB - Last synced at: about 2 years ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 0

sihyeonlee/dcm-img-viewer
DCM Simple Viewer
Language: Python - Size: 1.12 MB - Last synced at: over 2 years ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 0

rohithkumar31/pdf2dicom
Convert a PDF to an Encapsulated DICOM using pydicom
Language: Python - Size: 43 KB - Last synced at: over 2 years ago - Pushed at: about 3 years ago - Stars: 5 - Forks: 3

marcovirgolin/APhA
Code to automatically assemble highly-individualized phantoms from DICOM CT scans and RT STRUCT files
Language: Python - Size: 15.6 KB - Last synced at: over 2 years ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0

pydicom/node-dcm
Dockerized nodes for dicom (under development)
Language: Python - Size: 1.13 MB - Last synced at: 14 days ago - Pushed at: about 8 years ago - Stars: 2 - Forks: 2

WangRongsheng/Image-Registration
⛏️A collection of tools and practices for image registration. | 图像配准的工具和实践集合
Language: Python - Size: 20.5 KB - Last synced at: over 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

CFOP2357/Support-system-for-reading-mammograms
Demo of Viewer of mammograms on dicom format.
Language: Python - Size: 272 MB - Last synced at: over 1 year ago - Pushed at: almost 4 years ago - Stars: 1 - Forks: 0

shinaji/pydicom_ext
Pydicom extensions
Language: Python - Size: 30.3 KB - Last synced at: 11 months ago - Pushed at: over 6 years ago - Stars: 1 - Forks: 0

sauravmishra1710/Bio-Medical-Image-Analysis-with-DICOMs
Understanding the biomedical coordinate systems and DICOM format for deep learning medical image analysis
Language: Jupyter Notebook - Size: 90.9 MB - Last synced at: over 2 years ago - Pushed at: almost 4 years ago - Stars: 1 - Forks: 1

luigi-palladino/dicom_to_png
Simple standalone python script to save images from dicom files.
Language: Python - Size: 7.81 KB - Last synced at: over 2 years ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0

rmsandu/python-util-scripts
Python Snippets for plotting and saving, reading user input from keyboard, reading DICOM images, reading XML files.
Language: Jupyter Notebook - Size: 43 MB - Last synced at: over 2 years ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 3

PRITH-S07/DICOM-to-Jpeg-conversion-code
This code will help in converting your dicom images to jpeg. Have a look!
Language: Jupyter Notebook - Size: 477 KB - Last synced at: over 2 years ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0

sihyeonlee/DCM2IMG
Change DICOM file to Image file
Language: Python - Size: 333 KB - Last synced at: over 2 years ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 0

djib2011/thicom
Thanos' DICOM package
Language: Python - Size: 42 KB - Last synced at: over 2 years ago - Pushed at: about 5 years ago - Stars: 3 - Forks: 0
