GitHub topics: pydicom

Repositories

Anderson-Barcellos/Dicom-PDF

This module is designed to streamline the process of handling medical images by automating the download of DICOM files from an Orthanc server, converting these files into standard image formats, and compiling the images into a grid layout within a PDF document.

Language: Python - Size: 6.31 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 2 - Forks: 1

brainrot69420/medical-image-converter

# ⚙ medical-image-converterThis script converts DICOM files to JPG, PNG, or TIFF formats, allowing for batch processing and customizable output. It logs conversions and errors, ensuring a smooth experience for users. 🖼️✨

Language: Python - Size: 30.9 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 0 - Forks: 0

aignostics/python-sdk

🔬 Python SDK providing access to the Aignostics Platform. Includes Aignostics Launchpad (Desktop Application), Aignostics CLI (Command-Line Interface), example notebooks, and Aignostics Client Library.

Language: Python - Size: 55.9 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 6 - Forks: 0

rmsandu/segmentation-eval

Extract and evaluate radiomics for liver cancer tumors from DICOM segmentation masks. Using SimpleITK, PyRadiomics and PyDicom.

Language: Python - Size: 1.44 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 24 - Forks: 5

pydicom/pylibjpeg

A Python framework for decoding JPEG images, with a focus on supporting pydicom

Language: Python - Size: 50 MB - Last synced at: 3 days ago - Pushed at: 7 months ago - Stars: 48 - Forks: 4

ImagingDataCommons/highdicom

High-level DICOM abstractions for the Python programming language

Language: Python - Size: 7.47 MB - Last synced at: about 12 hours ago - Pushed at: about 13 hours ago - Stars: 197 - Forks: 45

radtorch/radtorch

Official repository for RADTorch - The Medical Imaging Machine Learning Framework

Language: Python - Size: 13.8 MB - Last synced at: 1 day ago - Pushed at: 10 months ago - Stars: 22 - Forks: 6

pydicom/pynetdicom

A Python implementation of the DICOM networking protocol

Language: Python - Size: 63.6 MB - Last synced at: 1 day ago - Pushed at: 9 days ago - Stars: 542 - Forks: 186

qurit/rt-utils

A minimal Python library to facilitate the creation and manipulation of DICOM RTStructs.

Language: Python - Size: 3.1 MB - Last synced at: 5 days ago - Pushed at: 3 months ago - Stars: 234 - Forks: 64

pydicom/pydicom

Read, modify and write DICOM files with python code

Language: Python - Size: 119 MB - Last synced at: 15 days ago - Pushed at: 15 days ago - Stars: 2,014 - Forks: 504

aleferrariuy/medical-image-converter

Converts a DICOM file or directory of files to JPG, PNG, or TIFF files

Language: Python - Size: 31 MB - Last synced at: 21 days ago - Pushed at: 21 days ago - Stars: 1 - Forks: 0

pydicom/deid

best effort anonymization for medical images using python

Language: Python - Size: 88.4 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 160 - Forks: 49

a-parida12/pdf2dcm

Python Package for PDF to DICOM Conversion

Language: Python - Size: 1.18 MB - Last synced at: 25 days ago - Pushed at: 3 months ago - Stars: 24 - Forks: 4

ImagingDataCommons/dicomweb-client

Python client for DICOMweb RESTful services

Language: Python - Size: 416 KB - Last synced at: 29 days ago - Pushed at: about 1 month ago - Stars: 121 - Forks: 40

py-baudin/dicomstack

A `pydicom` wrapper for simple loading and handling DICOM stacks

Language: Python - Size: 10.9 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 1 - Forks: 0

pydicom/pylibjpeg-openjpeg

A J2K, JP2 and HTJ2K plugin for pylibjpeg

Language: Python - Size: 403 KB - Last synced at: 7 days ago - Pushed at: 7 months ago - Stars: 22 - Forks: 4

cutright/DVH-Analytics 📦

A DICOM Database Application for Radiation Oncology

Language: Python - Size: 39.3 MB - Last synced at: 15 days ago - Pushed at: over 3 years ago - Stars: 85 - Forks: 33

pydicom/pylibjpeg-rle

Fast DICOM RLE plugin for pylibjpeg

Language: Python - Size: 133 KB - Last synced at: 27 days ago - Pushed at: about 2 months ago - Stars: 6 - Forks: 2

davidj-brewster/autoneurosegment

DiCOM to NiFTI processing pipeline orchestration, combining multiple planes via ANTs to maximise resolution and suitability for clustering and post-processing

Language: Shell - Size: 272 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 1 - Forks: 0

pydicom/dicom-database

a Dockerized storage and send/receiver for dicom images, intended to easily work with pydicom/dicom-datasets

Language: CSS - Size: 5.02 MB - Last synced at: 21 days ago - Pushed at: almost 8 years ago - Stars: 15 - Forks: 6

kelvinleandro/lung-segmentation-server Fork of ProjetoFinalPDI/backend

A FastAPI server for automatic lung segmentation from DICOM files

Language: Python - Size: 93 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

TankEngine-ish/ct_scan_human_organs_monai_segmentation

AI powered segmentation of human organs from CT images

Language: Jupyter Notebook - Size: 3.36 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 1 - Forks: 1

ericspod/DicomBrowser

Lightweight portable Dicom browser application

Language: Python - Size: 1.05 MB - Last synced at: about 1 month ago - Pushed at: 4 months ago - Stars: 27 - Forks: 6

cutright/DVHA-DICOM-Editor 📦

Simple DICOM tag editor built with wxPython and pydicom

Language: Python - Size: 1.21 MB - Last synced at: 15 days ago - Pushed at: about 4 years ago - Stars: 13 - Forks: 5

pydicom/dicom-containers

singularity and Docker containers to easily get started with common dicom tools

Language: Dockerfile - Size: 31.3 KB - Last synced at: 3 months ago - Pushed at: about 5 years ago - Stars: 22 - Forks: 1

tdiprima/dicom-utils

Decompressing, converting, extracting metadata, and processing DICOM medical imaging files.

Language: Python - Size: 104 KB - Last synced at: about 1 month ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0

junjslee/dicom2png

A simple Python tool to convert DICOM files to PNG images.

Language: Python - Size: 1.95 KB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0

tdiprima/dicom-image-converter

DICOM JPEG Decoding

Language: Java - Size: 22.5 KB - Last synced at: 22 days ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0

GSTT-CSC/XNAT

Tracks general documentation, standard operating procedures (SOP) and helper scripts for XNAT.

Language: Python - Size: 2.68 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 16 - Forks: 0

pawelzeja098/DICOM_To_PNG

Convert dicom file to png files.

Language: Python - Size: 717 KB - Last synced at: 3 months ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 0

pydicom/pylibjpeg-libjpeg

A JPEG, JPEG-LS and JPEG XT plugin for pylibjpeg

Language: Python - Size: 383 KB - Last synced at: 2 days ago - Pushed at: 7 months ago - Stars: 16 - Forks: 7

rxxbyy/dicom2png

Convert multiple DICOM format images to PNG in parallel using MPI.

Language: Python - Size: 163 KB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 1 - Forks: 1

RSIP-Vision/medio

Medical images I/O python package

Language: Python - Size: 160 KB - Last synced at: 23 days ago - Pushed at: over 2 years ago - Stars: 34 - Forks: 5

ChairChandler/Computer-Tomography-Simulation

Computer Tomography simulation using radon transform.

Language: Python - Size: 2.05 MB - Last synced at: 4 months ago - Pushed at: about 5 years ago - Stars: 3 - Forks: 1

pydicom/contrib-pydicom 📦

contributions to the core pydicom base, including tutorials, extra plugins, etc.

Language: Python - Size: 85.9 KB - Last synced at: 8 months ago - Pushed at: 12 months ago - Stars: 55 - Forks: 56

cyrilzakka/Phantom

Effective DICOM anonymization in Python

Language: Python - Size: 2.28 MB - Last synced at: 3 months ago - Pushed at: over 2 years ago - Stars: 4 - Forks: 1

AdamPiszczek/rt-struct-ct-visualization

App handles GUI creation and image processing from DICOM files. Built using the PyQt5 library, it facilitates an interface with buttons and functions

Language: HTML - Size: 1.14 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

Dr-Machine/backend

Backend for Dr. Machine

Language: Python - Size: 87.9 KB - Last synced at: about 1 year ago - Pushed at: almost 4 years ago - Stars: 1 - Forks: 1

Dr-Machine/ai_corona

Radiologist-Assistant Deep Learning Framework for COVID-19 Diagnosis in Chest CT Scans

Language: Python - Size: 15.6 KB - Last synced at: about 1 year ago - Pushed at: almost 4 years ago - Stars: 2 - Forks: 0

yjg30737/pyqt-dicom-viewer

DICOM file viewer powered by PyQt

Language: Python - Size: 4.63 MB - Last synced at: about 1 month ago - Pushed at: over 1 year ago - Stars: 3 - Forks: 0

mpierangeli/PEFI-Prostate_Cancer_MRI

Trabajo desarrollado para beca PEFI 2022: Software SAURUS para visualización, análisis y generación de informes automáticos de cancer prostático a partir de imágenes de MRI

Language: Python - Size: 27.2 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0

cwverhey/DICOMwaterequivalent

calculates water equivalent area (Aw) and water equivalent circle diameter (Dw) for CT DICOM images, per AAPM 204 and AAPM 220

Language: Python - Size: 1.16 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 6 - Forks: 0

rohantuli7/MedicalImageSegmentation

DICOM image segmentation implementation

Language: Jupyter Notebook - Size: 1.93 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0

gywlsdms123/DicomAnonymizerTool

Dicom Anonymized Tool

Language: Python - Size: 17.6 KB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 2 - Forks: 0

labhstats/mri_sort_filter_convert

Language: Python - Size: 56.6 KB - Last synced at: over 1 year ago - Pushed at: about 7 years ago - Stars: 0 - Forks: 0

jaimeh94/Point-Dose-Calculation_TG-43

Module tg43 in python to do a manual calculation of point dose in base of TG-43 from AAPM, in two ways: using a dcm file as input and input the data manually. Also there is a desktop app to do this more friendly.

Language: Python - Size: 61.5 KB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 4 - Forks: 0

brykov93/DICOMServer

Поиск исследований КТ в ПАКС (Комета) по заданным критериям, их получение и отправка не сервер обработки + Программа визуализация обработанных данных

Language: Python - Size: 8.79 KB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 0

brykov93/DICOMLocal

Поиск файлов исследований КТ по заданным параметрам (в примере- исследования легких), их копирование и анонимизация, а так же отправка на сервер обработки и получение результатов с уведомлением по электронной почте.

Language: Python - Size: 7.81 KB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

fpaupier/cancerous_cells_scans_processing 📦

Predict survival time from PET scans

Language: Python - Size: 30.3 MB - Last synced at: about 1 year ago - Pushed at: over 5 years ago - Stars: 9 - Forks: 6

pyb0924/MyPACS

MyPACS

Language: C# - Size: 3.57 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 4 - Forks: 4

amaljova/DicomDatabase

This script reads DICOM files in a source directory or in a list of source directories and searches for the patients in the given patients' list creates a DICOM DataBase in the destination directory, copies the files, and creates a DicomDataBase.csv file and a summary.txt file.

Language: Python - Size: 1.95 KB - Last synced at: almost 2 years ago - Pushed at: over 3 years ago - Stars: 2 - Forks: 0

SylwiaNowakowska/Pneumonia_Detection_from_Chest_X_rays

Classification of chest X-rays as pneumonia positive or negative with the use of convolutional neural networks based on DenseNet121.

Language: Jupyter Notebook - Size: 31.3 MB - Last synced at: almost 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 1

SylwiaNowakowska/Hippocampus_Segmentation_for_Alzheimer-s_Progression Fork of udacity/nd320-c3-3d-imaging-starter

U-Net algorithm for segmentation of Hippocampus from MRI brain scans for quantification of Alzheimer's Disease Progression.

Language: Jupyter Notebook - Size: 176 MB - Last synced at: almost 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

chris201706/PyEQD2

Convert DICOM-RT dose matrices to EQD2 via Python

Language: Python - Size: 254 KB - Last synced at: over 1 year ago - Pushed at: about 4 years ago - Stars: 12 - Forks: 5

ctsit/polyjuice Fork of naomidb/polyjuice

Anonymize dicom files

Language: Python - Size: 91.8 MB - Last synced at: almost 2 years ago - Pushed at: almost 3 years ago - Stars: 2 - Forks: 2

JeisonPacateque/Asphalt-Mixtures-Aging-Simulator

This project performs a 3D reconstruction of a cylindrical asphalt mixture sample from a set images on a Dicom file format. The components of asphalt mixture will be identified through 3-phase segmentation. Additionally, a 3D model of the asphalt mixture reconstruction was developed. The project was implemented on the Python programming language using the open-source libraries Numpy, Scipy, Pydicom, Scikit-learn, Matplotlib and Mayavi. A simulation of the asphalt mixtures aging process is implemented using numerical methods on the mechanical, themical and chemical fields.

Language: Python - Size: 750 KB - Last synced at: almost 2 years ago - Pushed at: over 7 years ago - Stars: 2 - Forks: 3

JacobJ215/Pneumonia-Classification

Developed and evaluated two models, to detect pneumonia cases from medical images. The custom resnet18 outperformed the custom classifier with an 81% accuracy, 66% precision, and 78% recall. Valuable for timely detection of pneumonia patients, improving outcomes, and reducing mortality. CAM visualizations provide

Language: Jupyter Notebook - Size: 5.75 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0