Ecosyste.ms: Repos
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GitHub topics: pydicom
pydicom/pydicom
Read, modify and write DICOM files with python code
Language: Python - Size: 101 MB - Last synced: about 4 hours ago - Pushed: about 7 hours ago - Stars: 1,838 - Forks: 471
ImagingDataCommons/dicomweb-client
Python client for DICOMweb RESTful services
Language: Python - Size: 451 KB - Last synced: 1 day ago - Pushed: 4 months ago - Stars: 106 - Forks: 35
tdiprima/dicom-python
Language: Jupyter Notebook - Size: 82 KB - Last synced: 3 days ago - Pushed: 4 days ago - Stars: 0 - Forks: 0
ImagingDataCommons/highdicom
High-level DICOM abstractions for the Python programming language
Language: Python - Size: 3.76 MB - Last synced: 13 days ago - Pushed: 14 days ago - Stars: 160 - Forks: 31
pydicom/deid
best effort anonymization for medical images using python
Language: Python - Size: 88.3 MB - Last synced: 1 day ago - Pushed: 9 months ago - Stars: 135 - Forks: 41
a-parida12/pdf2dcm
Python Package for PDF to DICOM Conversion
Language: Python - Size: 1.16 MB - Last synced: 7 days ago - Pushed: 29 days ago - Stars: 20 - Forks: 4
pydicom/pynetdicom
A Python implementation of the DICOM networking protocol
Language: Python - Size: 56.8 MB - Last synced: 13 days ago - Pushed: 13 days ago - Stars: 481 - Forks: 171
qurit/rt-utils
A minimal Python library to facilitate the creation and manipulation of DICOM RTStructs.
Language: Python - Size: 2.31 MB - Last synced: 22 days ago - Pushed: 22 days ago - Stars: 176 - Forks: 55
AdamPiszczek/rt-struct-ct-visualization
App handles GUI creation and image processing from DICOM files. Built using the PyQt5 library, it facilitates an interface with buttons and functions
Language: HTML - Size: 1.14 MB - Last synced: 23 days ago - Pushed: 23 days ago - Stars: 0 - Forks: 0
fpaupier/cancerous_cells_scans_processing 📦
Predict survival time from PET scans
Language: Python - Size: 30.3 MB - Last synced: about 1 month ago - Pushed: over 4 years ago - Stars: 9 - Forks: 6
Dr-Machine/backend
Backend for Dr. Machine
Language: Python - Size: 87.9 KB - Last synced: about 1 month ago - Pushed: almost 3 years ago - Stars: 1 - Forks: 1
Dr-Machine/ai_corona
Radiologist-Assistant Deep Learning Framework for COVID-19 Diagnosis in Chest CT Scans
Language: Python - Size: 15.6 KB - Last synced: about 1 month ago - Pushed: almost 3 years ago - Stars: 2 - Forks: 0
pydicom/pylibjpeg
A Python framework for decoding JPEG images, with a focus on supporting pydicom
Language: Python - Size: 50 MB - Last synced: 26 days ago - Pushed: about 2 months ago - Stars: 43 - Forks: 5
pydicom/pylibjpeg-rle
Fast DICOM RLE plugin for pylibjpeg
Language: Python - Size: 123 KB - Last synced: 28 days ago - Pushed: 4 months ago - Stars: 5 - Forks: 3
pydicom/pylibjpeg-libjpeg
A JPEG, JPEG-LS and JPEG XT plugin for pylibjpeg
Language: Python - Size: 255 KB - Last synced: about 1 month ago - Pushed: 2 months ago - Stars: 15 - Forks: 6
cutright/DVH-Analytics 📦
A DICOM Database Application for Radiation Oncology
Language: Python - Size: 39.3 MB - Last synced: 1 day ago - Pushed: over 2 years ago - Stars: 80 - Forks: 29
TankEngine-ish/Human_Organs_AI_Segmentation
AI segmentation of human organs from CT images
Language: Jupyter Notebook - Size: 2.58 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 0
radtorch/radtorch
Official repository for RADTorch - The Medical Imaging Machine Learning Framework
Language: Python - Size: 13.8 MB - Last synced: about 1 month ago - Pushed: about 2 years ago - Stars: 18 - Forks: 5
pydicom/pylibjpeg-openjpeg
A J2K and JP2 plugin for pylibjpeg
Language: Python - Size: 263 KB - Last synced: about 1 month ago - Pushed: 2 months ago - Stars: 18 - Forks: 5
ericspod/DicomBrowser
Lightweight portable Dicom browser application
Language: Python - Size: 1.03 MB - Last synced: 22 days ago - Pushed: 5 months ago - Stars: 27 - Forks: 5
mpierangeli/PEFI-Prostate_Cancer_MRI
Trabajo desarrollado para beca PEFI 2022: Software SAURUS para visualización, análisis y generación de informes automáticos de cancer prostático a partir de imágenes de MRI
Language: Python - Size: 27.2 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 1 - Forks: 0
GSTT-CSC/XNAT
Tracks general documentation, standard operating procedures (SOP) and helper scripts for XNAT.
Language: Python - Size: 2.37 MB - Last synced: 3 months ago - Pushed: 7 months ago - Stars: 12 - Forks: 0
RSIP-Vision/medio
Medical images I/O python package
Language: Python - Size: 160 KB - Last synced: 2 months ago - Pushed: over 1 year ago - Stars: 32 - Forks: 5
cwverhey/DICOMwaterequivalent
calculates water equivalent area (Aw) and water equivalent circle diameter (Dw) for CT DICOM images, per AAPM 204 and AAPM 220
Language: Python - Size: 1.16 MB - Last synced: 6 months ago - Pushed: over 2 years ago - Stars: 6 - Forks: 0
rohantuli7/MedicalImageSegmentation
DICOM image segmentation implementation
Language: Jupyter Notebook - Size: 1.93 MB - Last synced: 6 months ago - Pushed: over 2 years ago - Stars: 1 - Forks: 0
py-baudin/dicomstack
A `pydicom` wrapper for simple loading and handling DICOM stacks
Language: Python - Size: 10.9 MB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 1 - Forks: 0
gywlsdms123/DicomAnonymizerTool
Dicom Anonymized Tool
Language: Python - Size: 17.6 KB - Last synced: 7 months ago - Pushed: over 2 years ago - Stars: 2 - Forks: 0
yjg30737/pyqt-dicom-viewer
DICOM file viewer powered by PyQt
Language: Python - Size: 4.63 MB - Last synced: 4 months ago - Pushed: 7 months ago - Stars: 2 - Forks: 0
labhstats/mri_sort_filter_convert
Language: Python - Size: 56.6 KB - Last synced: 7 months ago - Pushed: almost 6 years ago - Stars: 0 - Forks: 0
jaimeh94/Point-Dose-Calculation_TG-43
Module tg43 in python to do a manual calculation of point dose in base of TG-43 from AAPM, in two ways: using a dcm file as input and input the data manually. Also there is a desktop app to do this more friendly.
Language: Python - Size: 61.5 KB - Last synced: 8 months ago - Pushed: over 2 years ago - Stars: 4 - Forks: 0
brykov93/DICOMServer
Поиск исследований КТ в ПАКС (Комета) по заданным критериям, их получение и отправка не сервер обработки + Программа визуализация обработанных данных
Language: Python - Size: 8.79 KB - Last synced: 8 months ago - Pushed: over 3 years ago - Stars: 1 - Forks: 0
brykov93/DICOMLocal
Поиск файлов исследований КТ по заданным параметрам (в примере- исследования легких), их копирование и анонимизация, а так же отправка на сервер обработки и получение результатов с уведомлением по электронной почте.
Language: Python - Size: 7.81 KB - Last synced: 8 months ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0
pawelzeja098/DICOM_To_PNG
Convert dicom file to png files.
Language: Python - Size: 717 KB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 0 - Forks: 0
pyb0924/MyPACS
MyPACS
Language: C# - Size: 3.57 MB - Last synced: 8 months ago - Pushed: over 2 years ago - Stars: 4 - Forks: 4
cutright/DVHA-DICOM-Editor 📦
Simple DICOM tag editor built with wxPython and pydicom
Language: Python - Size: 1.21 MB - Last synced: 16 days ago - Pushed: about 3 years ago - Stars: 12 - Forks: 5
amaljova/DicomDatabase
This script reads DICOM files in a source directory or in a list of source directories and searches for the patients in the given patients' list creates a DICOM DataBase in the destination directory, copies the files, and creates a DicomDataBase.csv file and a summary.txt file.
Language: Python - Size: 1.95 KB - Last synced: 9 months ago - Pushed: over 2 years ago - Stars: 2 - Forks: 0
SylwiaNowakowska/Pneumonia_Detection_from_Chest_X_rays
Classification of chest X-rays as pneumonia positive or negative with the use of convolutional neural networks based on DenseNet121.
Language: Jupyter Notebook - Size: 31.3 MB - Last synced: 10 months ago - Pushed: over 2 years ago - Stars: 0 - Forks: 1
SylwiaNowakowska/Hippocampus_Segmentation_for_Alzheimer-s_Progression Fork of udacity/nd320-c3-3d-imaging-starter
U-Net algorithm for segmentation of Hippocampus from MRI brain scans for quantification of Alzheimer's Disease Progression.
Language: Jupyter Notebook - Size: 176 MB - Last synced: 10 months ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0
pydicom/dicom-database
a Dockerized storage and send/receiver for dicom images, intended to easily work with pydicom/dicom-datasets
Language: CSS - Size: 5.02 MB - Last synced: 10 months ago - Pushed: almost 7 years ago - Stars: 13 - Forks: 7
chris201706/PyEQD2
Convert DICOM-RT dose matrices to EQD2 via Python
Language: Python - Size: 254 KB - Last synced: 7 months ago - Pushed: almost 3 years ago - Stars: 12 - Forks: 5
ctsit/polyjuice Fork of naomidb/polyjuice
Anonymize dicom files
Language: Python - Size: 91.8 MB - Last synced: 10 months ago - Pushed: almost 2 years ago - Stars: 2 - Forks: 2
JeisonPacateque/Asphalt-Mixtures-Aging-Simulator
This project performs a 3D reconstruction of a cylindrical asphalt mixture sample from a set images on a Dicom file format. The components of asphalt mixture will be identified through 3-phase segmentation. Additionally, a 3D model of the asphalt mixture reconstruction was developed. The project was implemented on the Python programming language using the open-source libraries Numpy, Scipy, Pydicom, Scikit-learn, Matplotlib and Mayavi. A simulation of the asphalt mixtures aging process is implemented using numerical methods on the mechanical, themical and chemical fields.
Language: Python - Size: 750 KB - Last synced: 9 months ago - Pushed: over 6 years ago - Stars: 2 - Forks: 3
pydicom/contrib-pydicom
contributions to the core pydicom base, including tutorials, extra plugins, etc.
Language: Python - Size: 84 KB - Last synced: 10 months ago - Pushed: over 1 year ago - Stars: 50 - Forks: 55
JacobJ215/Pneumonia-Classification
Developed and evaluated two models, to detect pneumonia cases from medical images. The custom resnet18 outperformed the custom classifier with an 81% accuracy, 66% precision, and 78% recall. Valuable for timely detection of pneumonia patients, improving outcomes, and reducing mortality. CAM visualizations provide
Language: Jupyter Notebook - Size: 5.75 MB - Last synced: 11 months ago - Pushed: 11 months ago - Stars: 0 - Forks: 0
pydicom/dicom-containers
singularity and Docker containers to easily get started with common dicom tools
Language: Dockerfile - Size: 31.3 KB - Last synced: 10 months ago - Pushed: about 4 years ago - Stars: 19 - Forks: 1
HelenaMaslowska/Tomograph
Tomograph - Radon transform experiment.
Language: Jupyter Notebook - Size: 13.7 MB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0
kirubel606/Dicom-to-Jpg
This is a Python script that converts DICOM files to JPEG files using the Pydicom and Pillow libraries
Language: Python - Size: 16.6 KB - Last synced: 10 months ago - Pushed: 10 months ago - Stars: 0 - Forks: 0
ChairChandler/Computer-Tomography-Simulation
Computer Tomography simulation using radon transform.
Language: Python - Size: 2.05 MB - Last synced: 10 months ago - Pushed: about 4 years ago - Stars: 3 - Forks: 1
mpierangeli/PFI
Proyecto Final Integrador Ingeniería Biomédica - Deep Learning para segmentación y clasificación de imágenes médicas
Language: Jupyter Notebook - Size: 107 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 0 - Forks: 0
nigelreign/PACS-Server
A python PACS server which runs on port 11112 and can be linked to other H.I.S like Orthanc
Language: Python - Size: 1000 KB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 6 - Forks: 0
nigelreign/converting-pdf-to-dcm
Python script to convert a pdf file to a dicom image
Language: Python - Size: 1.95 KB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 5 - Forks: 1
rmsandu/segmentation-eval
Extract and evaluate radiomics for liver cancer tumors from DICOM segmentation masks. Using SimpleITK, PyRadiomics and PyDicom.
Language: Python - Size: 1.44 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 13 - Forks: 5
twweeb/Biomedical-Image-Analysis 📦
Courseworks of CS5550 Computational Methods for Biomedical Image Analysis, NTHU.
Language: Python - Size: 1.15 MB - Last synced: about 1 year ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0
cyrilzakka/Phantom
Effective DICOM anonymization in Python
Language: Python - Size: 2.28 MB - Last synced: over 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 1
sihyeonlee/dcm-img-viewer
DCM Simple Viewer
Language: Python - Size: 1.12 MB - Last synced: over 1 year ago - Pushed: over 3 years ago - Stars: 1 - Forks: 0
rohithkumar31/pdf2dicom
Convert a PDF to an Encapsulated DICOM using pydicom
Language: Python - Size: 43 KB - Last synced: over 1 year ago - Pushed: almost 2 years ago - Stars: 5 - Forks: 3
marcovirgolin/APhA
Code to automatically assemble highly-individualized phantoms from DICOM CT scans and RT STRUCT files
Language: Python - Size: 15.6 KB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 1 - Forks: 0
pydicom/node-dcm
Dockerized nodes for dicom (under development)
Language: Python - Size: 1.13 MB - Last synced: about 1 month ago - Pushed: about 7 years ago - Stars: 2 - Forks: 2
WangRongsheng/Image-Registration
⛏️A collection of tools and practices for image registration. | 图像配准的工具和实践集合
Language: Python - Size: 20.5 KB - Last synced: over 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0
CFOP2357/Support-system-for-reading-mammograms
Demo of Viewer of mammograms on dicom format.
Language: Python - Size: 272 MB - Last synced: 3 months ago - Pushed: almost 3 years ago - Stars: 1 - Forks: 0
shinaji/pydicom_ext
Pydicom extensions
Language: Python - Size: 30.3 KB - Last synced: 2 months ago - Pushed: over 5 years ago - Stars: 1 - Forks: 0
sauravmishra1710/Bio-Medical-Image-Analysis-with-DICOMs
Understanding the biomedical coordinate systems and DICOM format for deep learning medical image analysis
Language: Jupyter Notebook - Size: 90.9 MB - Last synced: over 1 year ago - Pushed: almost 3 years ago - Stars: 1 - Forks: 1
luigi-palladino/dicom_to_png
Simple standalone python script to save images from dicom files.
Language: Python - Size: 7.81 KB - Last synced: over 1 year ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0
rmsandu/python-util-scripts
Python Snippets for plotting and saving, reading user input from keyboard, reading DICOM images, reading XML files.
Language: Jupyter Notebook - Size: 43 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 1 - Forks: 3
PRITH-S07/DICOM-to-Jpeg-conversion-code
This code will help in converting your dicom images to jpeg. Have a look!
Language: Jupyter Notebook - Size: 477 KB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0
sihyeonlee/DCM2IMG
Change DICOM file to Image file
Language: Python - Size: 333 KB - Last synced: over 1 year ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 0
djib2011/thicom
Thanos' DICOM package
Language: Python - Size: 42 KB - Last synced: over 1 year ago - Pushed: about 4 years ago - Stars: 3 - Forks: 0