LiorBanai/HDF5-CSharp Fork of reyntjesr/Hdf5DotnetTools

C# wrapper for windows/Linux systems for reading and writing H5 files

Language: C# - Size: 53.3 MB - Last synced: 14 minutes ago - Pushed: about 1 hour ago - Stars: 53 - Forks: 26

DOI-USGS/geobipy

Geophysical Bayesian Inference in Python. Docs:

Language: Python - Size: 231 MB - Last synced: about 10 hours ago - Pushed: about 11 hours ago - Stars: 77 - Forks: 19

hpc-io/h5bench

A benchmark suite for measuring HDF5 performance.

Language: C - Size: 1.19 MB - Last synced: about 10 hours ago - Pushed: about 11 hours ago - Stars: 30 - Forks: 27

saulpw/visidata

A terminal spreadsheet multitool for discovering and arranging data

Language: Python - Size: 43.5 MB - Last synced: about 12 hours ago - Pushed: about 14 hours ago - Stars: 7,452 - Forks: 271

tbeu/matio

MATLAB MAT File I/O Library

Language: C - Size: 5.22 MB - Last synced: about 16 hours ago - Pushed: about 17 hours ago - Stars: 326 - Forks: 97

naturerobots/mesh_tools

Language: C++ - Size: 508 KB - Last synced: about 8 hours ago - Pushed: about 18 hours ago - Stars: 207 - Forks: 42

hdmf-dev/hdmf

The Hierarchical Data Modeling Framework

Language: Python - Size: 8.96 MB - Last synced: about 14 hours ago - Pushed: 1 day ago - Stars: 46 - Forks: 23

LLNL/conduit

Simplified Data Exchange for HPC Simulations

Language: C++ - Size: 39.9 MB - Last synced: about 21 hours ago - Pushed: 1 day ago - Stars: 201 - Forks: 62

ornladios/ADIOS2

Next generation of ADIOS developed in the Exascale Computing Program

Language: C++ - Size: 31.4 MB - Last synced: about 20 hours ago - Pushed: about 21 hours ago - Stars: 256 - Forks: 121

rte-antares-rpackage/antaresRead

Import, manipulate and explore the results of an Antares simulation

Language: R - Size: 67.6 MB - Last synced: about 21 hours ago - Pushed: 1 day ago - Stars: 11 - Forks: 6

silx-kit/h5web

React components for data visualization and exploration

Language: TypeScript - Size: 62.2 MB - Last synced: 3 days ago - Pushed: 4 days ago - Stars: 153 - Forks: 16

marts/hdf5view

Simple Qt/Python based viewer for HDF5 files

Language: Python - Size: 113 KB - Last synced: about 23 hours ago - Pushed: 10 days ago - Stars: 26 - Forks: 8

sr-murthy/docker-h4cf Fork of hdfeos/docker-h4cf

Ubuntu Docker image for the NASA HDF-EOS H4CF Conversion Toolkit

Language: Dockerfile - Size: 12.7 KB - Last synced: 1 day ago - Pushed: 2 days ago - Stars: 0 - Forks: 0

saalfeldlab/n5-ij

ImageJ convenience layer for N5

Language: Java - Size: 2.63 MB - Last synced: about 5 hours ago - Pushed: 1 day ago - Stars: 13 - Forks: 8

nexdatas/nxstools

NeXus command-line tools for setting NeXus tango servers and preparing their configurtation

Language: Python - Size: 8.6 MB - Last synced: about 18 hours ago - Pushed: 2 days ago - Stars: 0 - Forks: 1

alexfikl/h5pyckle

A HDF5-based pickle-like library for object serialization.

Language: Python - Size: 258 KB - Last synced: 1 day ago - Pushed: 2 days ago - Stars: 0 - Forks: 0

h5preserve/h5preserve

Thin wrapper around h5py and HDF5, inspired by camel

Language: Python - Size: 314 KB - Last synced: 2 days ago - Pushed: 3 days ago - Stars: 3 - Forks: 2

pycroscopy/pyUSID

Framework for storing, visualizing, and processing Universal Spectroscopic and Imaging Data (USID)

Language: Python - Size: 74.2 MB - Last synced: 3 days ago - Pushed: 10 days ago - Stars: 25 - Forks: 18

fangq/jsonlab

JSONLab: compact, portable, robust JSON/binary-JSON encoder/decoder for MATLAB/Octave

Language: MATLAB - Size: 944 KB - Last synced: 1 day ago - Pushed: 3 days ago - Stars: 296 - Forks: 117

ami-iit/matio-cpp

A C++ wrapper of the matio library, with memory ownership handling, to read and write .mat files.

Language: C++ - Size: 5.54 MB - Last synced: 2 days ago - Pushed: 3 days ago - Stars: 54 - Forks: 8

rhuygen/hdf5_ui

A Textual User Interface for inspection of HDF5 files.

Language: Python - Size: 18 MB - Last synced: 2 days ago - Pushed: 3 days ago - Stars: 0 - Forks: 0

silx-kit/vscode-h5web

VSCode extension to explore and visualize HDF5 files

Language: TypeScript - Size: 1.36 MB - Last synced: 2 days ago - Pushed: 3 days ago - Stars: 25 - Forks: 5

ajelenak/ndl

Simple language with easy syntax for describing the content of multidimensional array (ndarray) data files

Size: 1.06 MB - Last synced: 3 days ago - Pushed: 3 days ago - Stars: 1 - Forks: 0

gnudatalanguage/gdl

GDL - GNU Data Language

Language: C++ - Size: 67.5 MB - Last synced: 3 days ago - Pushed: 3 days ago - Stars: 266 - Forks: 60

Unidata/netcdf-java

The Unidata netcdf-java library

Language: Java - Size: 1 GB - Last synced: 4 days ago - Pushed: 4 days ago - Stars: 138 - Forks: 67

ess-dmsc/h5cpp

C++ wrapper for the HDF5 C-library

Language: C++ - Size: 240 MB - Last synced: 4 days ago - Pushed: 4 days ago - Stars: 115 - Forks: 18

nexdatas/nxsdatawriter

NXSDataWriter Tango server dedicated to store data in NeXuS/HDF5 files

Language: Python - Size: 6.94 MB - Last synced: 4 days ago - Pushed: 4 days ago - Stars: 0 - Forks: 0

nexdatas/sardana-nxs-filerecorder

NeXus Scan Recorder for Sardana

Language: Python - Size: 1.4 MB - Last synced: 4 days ago - Pushed: 4 days ago - Stars: 0 - Forks: 0

ubarsc/kealib

KEALib provides an implementation of the GDAL data model. The format supports raster attribute tables, image pyramids, meta-data and in-built statistics while also handling very large files and compression throughout.

Language: C++ - Size: 696 KB - Last synced: 4 days ago - Pushed: 4 days ago - Stars: 12 - Forks: 7

tierra-colada/h5gt

HDF5 C++17 wrapper and includes python bindings. Aimed at developers who uses HDF5 in C++ and python project

Language: C++ - Size: 2.6 MB - Last synced: 5 days ago - Pushed: 5 days ago - Stars: 1 - Forks: 0

ARPA-SIMC/arkimet

A set of tools to organize, archive and distribute data files.

Language: C++ - Size: 16.9 MB - Last synced: 6 days ago - Pushed: 6 days ago - Stars: 13 - Forks: 5

cowqer/data-collection

多传感器数据多线程采集.存储H5格式,采用MQTT协议上传

Language: C++ - Size: 180 MB - Last synced: 6 days ago - Pushed: 6 days ago - Stars: 0 - Forks: 0

cid-harvard/pandas-to-postgres

Copy Pandas DataFrames and HDF5 files to PostgreSQL database

Language: Python - Size: 62.5 KB - Last synced: 7 days ago - Pushed: 8 days ago - Stars: 53 - Forks: 12

nco/nco

netCDF Operators

Language: C - Size: 78.1 MB - Last synced: about 20 hours ago - Pushed: 26 days ago - Stars: 165 - Forks: 49

NCAR/H5Z-SPERR

HDF5 Plugin for the SPERR Compressor

Language: C - Size: 2.5 MB - Last synced: 7 days ago - Pushed: 7 days ago - Stars: 0 - Forks: 0

ubermag/discretisedfield

Python package for the analysis and visualisation of finite-difference fields.

Language: Jupyter Notebook - Size: 118 MB - Last synced: 3 days ago - Pushed: 3 days ago - Stars: 17 - Forks: 12

scipp/scippnexus

h5py-like utility for NeXus files with seamless scipp integration

Language: Python - Size: 2.46 MB - Last synced: 3 days ago - Pushed: 4 days ago - Stars: 3 - Forks: 3

openPMD/openPMD-api

:floppy_disk: C++ & Python API for Scientific I/O

Language: C++ - Size: 21.4 MB - Last synced: 3 days ago - Pushed: 3 days ago - Stars: 133 - Forks: 51

openweathermap/deker-local-adapters

Local filesystem HDF5 storage for Deker

Language: Python - Size: 360 KB - Last synced: 9 days ago - Pushed: 9 days ago - Stars: 4 - Forks: 2

stemangiola/CuratedAtlasQueryR

Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.

Language: R - Size: 8.84 MB - Last synced: 8 days ago - Pushed: 9 days ago - Stars: 75 - Forks: 6

iannesbitt/readgssi

python tool to read and plot Geophysical Survey Systems Incorporated (GSSI) radar data

Language: Python - Size: 119 MB - Last synced: 8 days ago - Pushed: 9 months ago - Stars: 69 - Forks: 24

usnistgov/h5wasm

A WebAssembly HDF5 reader/writer library

Language: C++ - Size: 40.3 MB - Last synced: 7 days ago - Pushed: 24 days ago - Stars: 77 - Forks: 12

CGNS/CGNS

The CFD General Notation System (CGNS) provides a standard for recording and recovering computer data associated with the numerical solution of fluid dynamics equations. All development work and bug fixes should be based off the 'develop' branch, CGNS uses the branching model Gitflow.

Language: C - Size: 18.4 MB - Last synced: 10 days ago - Pushed: 10 days ago - Stars: 210 - Forks: 99

DonteRW/Read-and-Visualize-Geospatial-Data-using-Python

Python Jupyter notebooks for exploratory reading and visualization (RV) of various geospatial data products and file formats

Language: Jupyter Notebook - Size: 20.1 MB - Last synced: 11 days ago - Pushed: 11 days ago - Stars: 1 - Forks: 0

JuliaIO/HDF5.jl

Save and load data in the HDF5 file format from Julia

Language: Julia - Size: 9.74 MB - Last synced: 9 days ago - Pushed: about 1 month ago - Stars: 376 - Forks: 136

jamesmudd/jhdf

A pure Java HDF5 library

Language: Java - Size: 3.93 MB - Last synced: 16 days ago - Pushed: 19 days ago - Stars: 117 - Forks: 35

silx-kit/silx

silx toolkit

Language: Python - Size: 52.1 MB - Last synced: 2 days ago - Pushed: 2 days ago - Stars: 118 - Forks: 66

nvladimus/npy2bdv

Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.

Language: Python - Size: 4.12 MB - Last synced: 4 days ago - Pushed: 3 months ago - Stars: 32 - Forks: 12

NeurodataWithoutBorders/pynwb

A Python API for working with Neurodata stored in the NWB Format

Language: Python - Size: 48 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 168 - Forks: 79

gdsotirov/hdf5.SlackBuild

Slackware build script for HDF5

Language: Shell - Size: 16.6 KB - Last synced: 15 days ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

scivision/hdf5-tester 📦

Basic, easy, quick HDF5 recursive check for file errors with Python and h5py

Language: Python - Size: 14.6 KB - Last synced: 15 days ago - Pushed: almost 3 years ago - Stars: 4 - Forks: 0

tbeu/hdf5

Dummy project to build the HDF5 static library on Travis CI

Size: 5.86 KB - Last synced: 15 days ago - Pushed: about 1 year ago - Stars: 2 - Forks: 0

algotom/broh5

Browser-based GUI HDF Viewer https://broh5.readthedocs.io

Language: Python - Size: 1.49 MB - Last synced: 15 days ago - Pushed: 16 days ago - Stars: 3 - Forks: 0

geospace-code/matlab-stdlib

HDF5, NetCDF4, fileio, system functions that act as an unofficial "stdlib" for Matlab.

Language: MATLAB - Size: 321 KB - Last synced: 15 days ago - Pushed: 16 days ago - Stars: 10 - Forks: 2

ajelenak/ros3vfd-log-info

Simple dashboard for HDF5 library ROS3 virtual file driver log data

Language: Jupyter Notebook - Size: 188 KB - Last synced: 16 days ago - Pushed: 16 days ago - Stars: 2 - Forks: 1

MDCHAMP/hawk-data

API for Access to the BAE T1A Hawk Starboard wing and Full Structure Modal Tests

Language: Python - Size: 5.09 MB - Last synced: 18 days ago - Pushed: 18 days ago - Stars: 5 - Forks: 0

vaexio/vaex

Out-of-Core hybrid Apache Arrow/NumPy DataFrame for Python, ML, visualization and exploration of big tabular data at a billion rows per second 🚀

Language: Python - Size: 130 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 8,171 - Forks: 588

titusjan/argos

Argos: a data viewer that can read HDF5, NetCDF4, and other file formats.

Language: Python - Size: 4.95 MB - Last synced: 19 days ago - Pushed: 28 days ago - Stars: 171 - Forks: 26

HDFGroup/hdf5-json

Specification and tools for representing HDF5 in JSON

Language: Python - Size: 1.94 MB - Last synced: 8 days ago - Pushed: 19 days ago - Stars: 71 - Forks: 25

pyscada/PyScada

PyScada is a open source scada system that uses the Django framework as backend

Language: JavaScript - Size: 10.2 MB - Last synced: 20 days ago - Pushed: 3 months ago - Stars: 458 - Forks: 141

legend-exp/LegendHDF5IO.jl

HDF5-IO in Julia for the LEGEND experiment

Language: Julia - Size: 559 KB - Last synced: 21 days ago - Pushed: 21 days ago - Stars: 0 - Forks: 6

nens/threedigrid

grid administration for 3Di models

Language: Python - Size: 1.02 MB - Last synced: 25 days ago - Pushed: 25 days ago - Stars: 9 - Forks: 0

legend-exp/legend-pydataobj

LEGEND Python Data Objects

Language: Python - Size: 1.01 MB - Last synced: 25 days ago - Pushed: 25 days ago - Stars: 0 - Forks: 6

SWIFTSIM/swiftsimio

Python library for reading SWIFT data. Uses unyt and h5py.

Language: Python - Size: 5.27 MB - Last synced: 22 days ago - Pushed: 23 days ago - Stars: 14 - Forks: 13

lazzati-astro/MCRaT

Monte Carlo Radiation Transfer Through an Astrophysical Jet

Language: C - Size: 125 MB - Last synced: 22 days ago - Pushed: 23 days ago - Stars: 5 - Forks: 8

Unidata/awips2-ncep

Language: Java - Size: 105 MB - Last synced: 8 days ago - Pushed: 3 months ago - Stars: 3 - Forks: 6

geospace-code/h5fortran

Lightweight HDF5 polymorphic Fortran: h5write() h5read()

Language: Fortran - Size: 3.7 MB - Last synced: 15 days ago - Pushed: 25 days ago - Stars: 96 - Forks: 23

HDFGroup/hsds

Cloud-native, service based access to HDF data

Language: Python - Size: 7.4 MB - Last synced: 25 days ago - Pushed: 25 days ago - Stars: 120 - Forks: 52

silx-kit/h5grove

h5grove is a Python package that provides utilities to design backends serving HDF5 file content: attributes, metadata and data.

Language: Python - Size: 1.07 MB - Last synced: 3 days ago - Pushed: 24 days ago - Stars: 9 - Forks: 6

silx-kit/jupyterlab-h5web

A JupyterLab extension to explore and visualize HDF5 file contents. Based on https://github.com/silx-kit/h5web.

Language: Python - Size: 1.34 MB - Last synced: 3 days ago - Pushed: 21 days ago - Stars: 58 - Forks: 8

geospace-code/h5fortran-mpi

HDF5-MPI parallel Fortran object-oriented interface

Language: Fortran - Size: 751 KB - Last synced: 15 days ago - Pushed: 25 days ago - Stars: 17 - Forks: 1

FlowModelingControl/flowtorch

flowTorch - a Python library for analysis and reduced-order modeling of fluid flows

Language: Python - Size: 21.2 MB - Last synced: 23 days ago - Pushed: 23 days ago - Stars: 114 - Forks: 42

mbsim-env/hdf5serie

A HDF5 Wrapper for Time Series

Language: C++ - Size: 652 KB - Last synced: 26 days ago - Pushed: 27 days ago - Stars: 8 - Forks: 2

rootpy/rootpy

A pythonic interface for the ROOT libraries on top of the PyROOT bindings.

Language: Python - Size: 11 MB - Last synced: 19 days ago - Pushed: over 4 years ago - Stars: 201 - Forks: 73

zimmerrol/data-viewer

Utility tool to inspect various data formats to verify data integrity in machine learning

Language: Python - Size: 15.6 KB - Last synced: 26 days ago - Pushed: almost 6 years ago - Stars: 1 - Forks: 0

uchicago-cs/deepdish

Flexible HDF5 saving/loading and other data science tools from the University of Chicago

Language: Python - Size: 606 KB - Last synced: 26 days ago - Pushed: 9 months ago - Stars: 266 - Forks: 59

open2c/cooler

A cool place to store your Hi-C

Language: Python - Size: 88.1 MB - Last synced: 4 days ago - Pushed: 4 days ago - Stars: 189 - Forks: 53

BiocPy/HDF5Array

HDF5 File-backed arrays for Python

Language: Python - Size: 1.19 MB - Last synced: 11 days ago - Pushed: 11 days ago - Stars: 0 - Forks: 0

aldanor/hdf5-rust

HDF5 for Rust

Language: Rust - Size: 1.68 MB - Last synced: 14 days ago - Pushed: 26 days ago - Stars: 292 - Forks: 80

xieguigang/sciBASIC

sciBASIC# is a kind of dialect language which is derive from the native VB.NET language, and written for the data scientist.

Language: Visual Basic .NET - Size: 315 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 74 - Forks: 35

NeurodataWithoutBorders/nwb_hackathons

Repository for collecting materials from nwb hackathons

Language: Jupyter Notebook - Size: 344 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 19 - Forks: 87

rburkholder/trade-frame

C++ 17 based library (with sample applications) for testing equities, futures, etfs & options based automated trading ideas using DTN IQFeed real time data feed and Interactive Brokers (IB TWS API) for trade execution. Some support for Alpaca & Phemex. Notifications via Telegram [irc: Libra #tradeframe ]

Language: C++ - Size: 21 MB - Last synced: 29 days ago - Pushed: about 2 months ago - Stars: 423 - Forks: 140

gauteh/hidefix

🐕 Concurrent HDF5 and NetCDF4 reader (experimental)

Language: Rust - Size: 8.03 MB - Last synced: 15 days ago - Pushed: 6 months ago - Stars: 45 - Forks: 5

Unidata/awips2

Weather forecasting display and analysis package developed by NWS/Raytheon, released as open source software by Unidata.

Language: Java - Size: 3.59 GB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 164 - Forks: 65

zincware/MDSuite

A post-processing engine for particle simulations

Language: Python - Size: 52.2 MB - Last synced: 3 days ago - Pushed: 3 days ago - Stars: 36 - Forks: 7

darcamo/conan-hdf5 📦

Repository for conan HDF5 recipe

Language: Python - Size: 12.7 KB - Last synced: about 1 month ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

davidssmith/rawarray-rust

Rust implementation of the RawArray file format

Language: Rust - Size: 151 KB - Last synced: 18 days ago - Pushed: over 4 years ago - Stars: 1 - Forks: 0

openweathermap/deker-server-adapters

Server storage for Deker

Language: Python - Size: 238 KB - Last synced: 14 days ago - Pushed: 15 days ago - Stars: 2 - Forks: 1

h5io/h5io_browser

Easy navigation and data storage for HDF5

Language: Python - Size: 3.41 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 1 - Forks: 2

chunshen1987/iEBE-MUSIC

This is a repository is an overarching numerical framework for event-by-event simulations of relativistic heavy-ion collisions

Language: Python - Size: 988 KB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 11 - Forks: 8

grimbough/rhdf5

Package providing an interface between HDF5 and R

Language: R - Size: 23.3 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 59 - Forks: 24

grimbough/rhdf5filters

Distributing additional HDF5 compression filters as an R package. Intended to be used with rhdf5, however the compiled filters can also be used with external applications.

Language: C - Size: 6.8 MB - Last synced: about 1 month ago - Pushed: 2 months ago - Stars: 5 - Forks: 6

ess-dmsc/kafka-to-nexus

(Moved to https://gitlab.esss.lu.se/ecdc/ess-dmsc/kafka-to-nexus) Writes NeXus files from experiment data streamed through Apache Kafka.

Language: C++ - Size: 8.54 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 2 - Forks: 4

rsharp-lang/R-sharp

R# language is a kind of R liked vectorized language implements on .NET environment for the bioinformatics data analysis

Language: Visual Basic .NET - Size: 228 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 24 - Forks: 5

matthiasprobst/h5RDMtoolbox

Supporting a FAIR Research Data lifecycle using Python and HDF5.

Language: Python - Size: 58.6 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 6 - Forks: 0

pyiron/pyiron

pyiron - an integrated development environment (IDE) for computational materials science.

Language: Jupyter Notebook - Size: 45 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 326 - Forks: 45

cgohlke/cmapfile

Write Chimera Map (CMAP) files

Language: Python - Size: 56.6 KB - Last synced: 19 days ago - Pushed: 9 months ago - Stars: 1 - Forks: 0

gjbex/training-material

A collection of code examples as well as presentations for training purposes

Language: Jupyter Notebook - Size: 184 MB - Last synced: about 1 month ago - Pushed: 8 months ago - Stars: 120 - Forks: 52

gjbex/Scientific-Python

Repository for participants of the "Scientific Python" training

Language: Jupyter Notebook - Size: 63.2 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 17 - Forks: 11

BioPhysicsUP/Full_SMS

This is a repo for a Python based application to open SMS .h5 files, and perform the initial analysis and exporting.

Language: Python - Size: 52.5 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 0 - Forks: 0