openPMD/openPMD-api

:floppy_disk: C++ & Python API for Scientific I/O

Language: C++ - Size: 21.6 MB - Last synced at: about 1 hour ago - Pushed at: about 3 hours ago - Stars: 147 - Forks: 52

nexdatas/nxstools

NeXus command-line tools for setting NeXus tango servers and preparing their configurtation

Language: Python - Size: 10.1 MB - Last synced at: about 4 hours ago - Pushed at: about 5 hours ago - Stars: 0 - Forks: 1

h5io/h5io_browser

Easy navigation and data storage for HDF5

Language: Python - Size: 3.49 MB - Last synced at: about 15 hours ago - Pushed at: about 16 hours ago - Stars: 2 - Forks: 3

gnudatalanguage/gdl

GDL - GNU Data Language

Language: C++ - Size: 68.1 MB - Last synced at: about 4 hours ago - Pushed at: 6 days ago - Stars: 287 - Forks: 63

modelica-3rdparty/ExternData

:page_facing_up: Modelica library for data I/O of CSV, INI, JSON, MATLAB MAT, SSV, TIR, Excel XLS/XLSX and XML files

Language: C - Size: 60.9 MB - Last synced at: about 18 hours ago - Pushed at: about 18 hours ago - Stars: 77 - Forks: 32

SWIFTSIM/swiftsimio

Python library for reading SWIFT data. Uses unyt and h5py.

Language: Python - Size: 51.4 MB - Last synced at: about 19 hours ago - Pushed at: about 19 hours ago - Stars: 20 - Forks: 12

ubarsc/kealib

KEALib provides an implementation of the GDAL data model. The format supports raster attribute tables, image pyramids, meta-data and in-built statistics while also handling very large files and compression throughout.

Language: C++ - Size: 773 KB - Last synced at: 1 day ago - Pushed at: 1 day ago - Stars: 13 - Forks: 7

rburkholder/trade-frame

C++ 17 based library (with sample applications) for testing equities, futures, currencies, etfs & options based automated trading ideas using DTN IQFeed real time data feed and Interactive Brokers (IB TWS API) for trade execution. Some support for Alpaca & Phemex. Notifications via Telegram

Language: C++ - Size: 24.4 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 536 - Forks: 169

HDFGroup/hdf5

Official HDF5® Library Repository

Language: C - Size: 600 MB - Last synced at: about 17 hours ago - Pushed at: about 18 hours ago - Stars: 699 - Forks: 285

Unidata/netcdf-java

The Unidata netcdf-java library

Language: Java - Size: 986 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 160 - Forks: 74

FlowModelingControl/flowtorch

flowTorch - a Python library for analysis and reduced-order modeling of fluid flows

Language: Python - Size: 20.6 MB - Last synced at: about 5 hours ago - Pushed at: about 1 month ago - Stars: 150 - Forks: 48

xieguigang/sciBASIC

sciBASIC# is a kind of dialect language which is derive from the native VB.NET language, and written for the data scientist.

Language: Visual Basic .NET - Size: 326 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 73 - Forks: 35

ornladios/ADIOS2

Next generation of ADIOS developed in the Exascale Computing Program

Language: C++ - Size: 32.2 MB - Last synced at: 3 days ago - Pushed at: 4 days ago - Stars: 284 - Forks: 129

JuliaIO/HDF5.jl

Save and load data in the HDF5 file format from Julia

Language: Julia - Size: 9.44 MB - Last synced at: 3 days ago - Pushed at: 27 days ago - Stars: 395 - Forks: 142

rsharp-lang/R-sharp

R# language is a kind of R liked vectorized language implements on .NET environment for the bioinformatics data analysis

Language: Visual Basic .NET - Size: 274 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 29 - Forks: 5

iannesbitt/readgssi

python tool to read and plot Geophysical Survey Systems Incorporated (GSSI) radar data

Language: Python - Size: 119 MB - Last synced at: about 10 hours ago - Pushed at: 9 months ago - Stars: 79 - Forks: 27

NeurodataWithoutBorders/pynwb

A Python API for working with Neurodata stored in the NWB Format

Language: Python - Size: 44.9 MB - Last synced at: 4 days ago - Pushed at: 5 days ago - Stars: 193 - Forks: 86

geospace-code/h5fortran

Lightweight HDF5 polymorphic Fortran: h5write() h5read()

Language: Fortran - Size: 3.75 MB - Last synced at: about 5 hours ago - Pushed at: 5 days ago - Stars: 106 - Forks: 25

nco/nco

netCDF Operators

Language: C - Size: 78 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 182 - Forks: 51

dolphindb/DolphinDBPlugin

Language: C++ - Size: 1.08 GB - Last synced at: 4 days ago - Pushed at: 5 days ago - Stars: 51 - Forks: 34

Unidata/awips2

Weather forecasting display and analysis package developed by NWS/Raytheon, released as open source software by Unidata.

Language: Java - Size: 3.64 GB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 187 - Forks: 70

silx-kit/h5web

React components for data visualization and exploration

Language: TypeScript - Size: 81.5 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 218 - Forks: 25

GeorchPz/photokinetic_particle_tracking

Python toolkit for detecting, tracking and analyzing photokinetic particles in video recordings. Features particle detection with Trackpy, trajectory analysis with spline-fitted kinematics, visualization tools, and parameter optimization. Supports complete workflow from detection to visualization with data storage in HDF5 format.

Language: Python - Size: 15.6 KB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 0 - Forks: 0

mbsim-env/mbsim

A multi-body simulation software

Language: C++ - Size: 56.1 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 45 - Forks: 18

usnistgov/h5wasm

A WebAssembly HDF5 reader/writer library

Language: C++ - Size: 40.5 MB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 106 - Forks: 16

silx-kit/silx

silx toolkit

Language: Python - Size: 51.1 MB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 144 - Forks: 77

nmichlo/mtg-dataset

🧙‍♀️🃏✨ Magic the Gathering image dataset with automatic multithreaded downloading and optional conversion to HDF5.

Language: Python - Size: 562 KB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 4 - Forks: 2

vaexio/vaex

Out-of-Core hybrid Apache Arrow/NumPy DataFrame for Python, ML, visualization and exploration of big tabular data at a billion rows per second 🚀

Language: Python - Size: 133 MB - Last synced at: 8 days ago - Pushed at: 7 months ago - Stars: 8,365 - Forks: 599

CCampJr/LazyHDF5 📦

Making H5py easier (command line and pyqt5 tools)

Language: Python - Size: 77.1 KB - Last synced at: 3 days ago - Pushed at: over 3 years ago - Stars: 11 - Forks: 1

hdmf-dev/hdmf

The Hierarchical Data Modeling Framework

Language: Python - Size: 9.65 MB - Last synced at: about 15 hours ago - Pushed at: about 16 hours ago - Stars: 49 - Forks: 25

NeurodataWithoutBorders/nwb_hackathons

Repository for collecting materials from nwb hackathons

Language: Jupyter Notebook - Size: 378 MB - Last synced at: 11 days ago - Pushed at: 11 days ago - Stars: 24 - Forks: 84

pyscada/PyScada

PyScada is a open source scada system that uses the Django framework as backend

Language: JavaScript - Size: 10.3 MB - Last synced at: 11 days ago - Pushed at: 11 days ago - Stars: 579 - Forks: 177

LiorBanai/HDF5-CSharp Fork of reyntjesr/Hdf5DotnetTools

C# wrapper for windows/Linux systems for reading and writing H5 files

Language: C# - Size: 53.5 MB - Last synced at: 11 days ago - Pushed at: 11 days ago - Stars: 60 - Forks: 28

DavidAce/h5pp

A C++17 interface for HDF5

Language: C++ - Size: 10.4 MB - Last synced at: 11 days ago - Pushed at: 11 days ago - Stars: 95 - Forks: 16

silx-kit/myhdf5

Online service to explore and visualise HDF5 files

Language: TypeScript - Size: 1010 KB - Last synced at: 10 days ago - Pushed at: 22 days ago - Stars: 15 - Forks: 3

matthiasprobst/h5RDMtoolbox

Supporting a FAIR Research Data lifecycle using Python and HDF5.

Language: Python - Size: 61.9 MB - Last synced at: 12 days ago - Pushed at: 12 days ago - Stars: 16 - Forks: 1

usnistgov/jsfive

A pure javascript HDF5 reader

Language: JavaScript - Size: 1.13 MB - Last synced at: 11 days ago - Pushed at: 21 days ago - Stars: 111 - Forks: 21

Francesco-Zeno-Costanzo/datxpy

Simple code to read and display data files in .datx format

Language: Python - Size: 53.7 KB - Last synced at: 13 days ago - Pushed at: 13 days ago - Stars: 0 - Forks: 0

LLNL/conduit

Simplified Data Exchange for HPC Simulations

Language: C++ - Size: 41.8 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 222 - Forks: 68

danionella/daio

video and data IO tools for Python

Language: Python - Size: 51.8 KB - Last synced at: 13 days ago - Pushed at: 13 days ago - Stars: 6 - Forks: 0

chunshen1987/iEBE-MUSIC

This is a repository is an overarching numerical framework for event-by-event simulations of relativistic heavy-ion collisions

Language: Python - Size: 5.71 MB - Last synced at: 13 days ago - Pushed at: 13 days ago - Stars: 16 - Forks: 9

aldanor/hdf5-rust

HDF5 for Rust

Language: Rust - Size: 1.69 MB - Last synced at: 11 days ago - Pushed at: 9 months ago - Stars: 317 - Forks: 95

nexdatas/nxsdatawriter

NXSDataWriter Tango server dedicated to store data in NeXuS/HDF5 files

Language: Python - Size: 7.49 MB - Last synced at: 10 days ago - Pushed at: 13 days ago - Stars: 0 - Forks: 0

tgwoodcock/hdf5view

Simple Qt/Python based viewer for HDF5 files

Language: Python - Size: 12 MB - Last synced at: 9 days ago - Pushed at: 27 days ago - Stars: 45 - Forks: 12

NeuroJSON/jsonlab

JSONLab: compact, portable, robust JSON/binary-JSON encoder/decoder for MATLAB/Octave

Language: MATLAB - Size: 1000 KB - Last synced at: 3 days ago - Pushed at: 28 days ago - Stars: 310 - Forks: 116

petrobras/GeoSlicer

Open source digital rocks software platform for micro-CT, CT, thin sections and borehole image analysis. Includes tools for: annotation, AI, HPC, porous media flow simulation, porosity analysis, permeability analysis and much more.

Language: Python - Size: 104 MB - Last synced at: 9 days ago - Pushed at: 14 days ago - Stars: 47 - Forks: 10

HDFGroup/hsds

Cloud-native, service based access to HDF data

Language: Python - Size: 7.48 MB - Last synced at: 12 days ago - Pushed at: 2 months ago - Stars: 142 - Forks: 56

pyCGNS/pyCGNS

A Python package for CGNS

Language: Python - Size: 53.4 MB - Last synced at: about 5 hours ago - Pushed at: 14 days ago - Stars: 44 - Forks: 18

silx-kit/h5grove

h5grove is a Python package that provides utilities to design backends serving HDF5 file content: attributes, metadata and data.

Language: Python - Size: 1.23 MB - Last synced at: 10 days ago - Pushed at: 14 days ago - Stars: 20 - Forks: 9

tbeu/matio

MATLAB MAT File I/O Library

Language: C - Size: 4.98 MB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 361 - Forks: 102

cpaw24/h5da

HDF5 Data Access in Python

Language: HTML - Size: 307 KB - Last synced at: 15 days ago - Pushed at: 15 days ago - Stars: 0 - Forks: 0

uiuc-hpc/Recorder

Comprehensive Parallel I/O Tracing and Analysis

Language: C - Size: 20.6 MB - Last synced at: 5 days ago - Pushed at: 6 days ago - Stars: 47 - Forks: 16

pyiron/pyiron

pyiron - an integrated development environment (IDE) for computational materials science.

Language: Jupyter Notebook - Size: 45.2 MB - Last synced at: 11 days ago - Pushed at: 15 days ago - Stars: 393 - Forks: 51

HDFGroup/hdf5-json

Specification and tools for representing HDF5 in JSON

Language: Python - Size: 2.58 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 79 - Forks: 25

krishna-aditi/Sevir-Lambda-APIs

SEVIR Lambda functions for Summarization and Named-Entity Recognition. Deployed on AWS ECR.

Language: Python - Size: 2.11 MB - Last synced at: 15 days ago - Pushed at: 15 days ago - Stars: 0 - Forks: 0

berquist/eg

Language: C++ - Size: 688 KB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 0 - Forks: 0

p2p-ld/numpydantic

Type annotations for specifying, validating, and serializing arrays with arbitrary backends in Pydantic (and beyond)

Language: Python - Size: 791 KB - Last synced at: 12 days ago - Pushed at: about 1 month ago - Stars: 96 - Forks: 1

NLPOptimize/FormatFlex

🚀 A flexible Python library for easy handling and conversion of Hierarchical, Tabular, and Serialized data formats.

Size: 2.93 KB - Last synced at: 18 days ago - Pushed at: 24 days ago - Stars: 0 - Forks: 0

Huber-group-EMBL/rhdf5

Package providing an interface between HDF5 and R

Language: R - Size: 23.4 MB - Last synced at: 5 days ago - Pushed at: 29 days ago - Stars: 63 - Forks: 21

gjbex/Scientific-Python

Repository for participants of the "Scientific Python" training

Language: Jupyter Notebook - Size: 63.3 MB - Last synced at: 19 days ago - Pushed at: 19 days ago - Stars: 22 - Forks: 12

hpc-io/h5bench

A benchmark suite for measuring HDF5 performance.

Language: C - Size: 1.24 MB - Last synced at: 9 days ago - Pushed at: 8 months ago - Stars: 40 - Forks: 29

open2c/cooler

A cool place to store your Hi-C

Language: Python - Size: 88.1 MB - Last synced at: about 19 hours ago - Pushed at: about 20 hours ago - Stars: 215 - Forks: 56

silx-kit/vscode-h5web

VSCode extension to explore and visualize HDF5 files

Language: TypeScript - Size: 1.49 MB - Last synced at: 10 days ago - Pushed at: 20 days ago - Stars: 39 - Forks: 5

eric2003/OneFLOW

LargeScale Multiphysics Scientific Simulation Environment-OneFLOW CFD

Language: C++ - Size: 113 MB - Last synced at: 21 days ago - Pushed at: 21 days ago - Stars: 258 - Forks: 82

scipp/scippnexus

h5py-like utility for NeXus files with seamless scipp integration

Language: Python - Size: 3.04 MB - Last synced at: 21 days ago - Pushed at: 21 days ago - Stars: 3 - Forks: 4

PavelFalta/Creathon25

HDF5 + ARTF toolkit for the Creathon 2025 event

Language: Python - Size: 2.28 MB - Last synced at: 21 days ago - Pushed at: 21 days ago - Stars: 0 - Forks: 0

CGNS/CGNS

The CFD General Notation System (CGNS) provides a standard for recording and recovering computer data associated with the numerical solution of fluid dynamics equations. All development work and bug fixes should be based off the 'develop' branch, CGNS uses the branching model Gitflow.

Language: C - Size: 18.5 MB - Last synced at: 11 days ago - Pushed at: about 2 months ago - Stars: 237 - Forks: 104

ami-iit/matio-cpp

A C++ wrapper of the matio library, with memory ownership handling, to read and write .mat files.

Language: C++ - Size: 6.39 MB - Last synced at: 13 days ago - Pushed at: about 2 months ago - Stars: 63 - Forks: 9

scikit-hep/awkward-0.x 📦

Manipulate arrays of complex data structures as easily as Numpy.

Language: Python - Size: 6.42 MB - Last synced at: 18 days ago - Pushed at: about 4 years ago - Stars: 214 - Forks: 39

ARPA-SIMC/arkimet

A set of tools to organize, archive and distribute data files.

Language: C++ - Size: 19.2 MB - Last synced at: 25 days ago - Pushed at: 25 days ago - Stars: 15 - Forks: 5

TUM-I5/XdmfWriter

Small library for writing time series of unstructured meshes in XDMF/HDF5

Language: C++ - Size: 177 KB - Last synced at: 25 days ago - Pushed at: 25 days ago - Stars: 3 - Forks: 3

saalfeldlab/n5-ij

ImageJ convenience layer for N5

Language: Java - Size: 2.69 MB - Last synced at: 6 days ago - Pushed at: 20 days ago - Stars: 16 - Forks: 12

zincware/MDSuite

A post-processing engine for particle simulations

Language: Python - Size: 52.2 MB - Last synced at: about 16 hours ago - Pushed at: about 17 hours ago - Stars: 40 - Forks: 8

rte-antares-rpackage/antaresRead

Import, manipulate and explore the results of an Antares simulation

Language: R - Size: 67.9 MB - Last synced at: 5 days ago - Pushed at: 18 days ago - Stars: 13 - Forks: 6

NCAR/H5Z-SPERR

HDF5 Plugin for the SPERR Compressor

Language: C - Size: 2.53 MB - Last synced at: 27 days ago - Pushed at: 27 days ago - Stars: 0 - Forks: 1

Huber-group-EMBL/rhdf5filters

Distributing additional HDF5 compression filters as an R package. Intended to be used with rhdf5, however the compiled filters can also be used with external applications.

Language: C - Size: 6.92 MB - Last synced at: 4 days ago - Pushed at: 29 days ago - Stars: 5 - Forks: 6

Huber-group-EMBL/Rhdf5lib

Distribution of the HDF5 library in an R package

Language: R - Size: 138 MB - Last synced at: 29 days ago - Pushed at: 29 days ago - Stars: 6 - Forks: 14

NeuroJSON/jsnirf

A JSON/binary JSON extension to the SNIRF format

Size: 81.1 KB - Last synced at: 3 days ago - Pushed at: 29 days ago - Stars: 2 - Forks: 7

ajelenak/ndl

Simple language with easy syntax for describing the content of multidimensional array (ndarray) data files

Size: 1.06 MB - Last synced at: 30 days ago - Pushed at: 30 days ago - Stars: 1 - Forks: 0

gdsotirov/hdf5.SlackBuild

Slackware build script for HDF5

Language: Shell - Size: 16.6 KB - Last synced at: 30 days ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0

MedPhysUL/delia

DICOM Extraction for Large-scale Image Analysis (DELIA).

Language: Python - Size: 12.9 MB - Last synced at: 13 days ago - Pushed at: 3 months ago - Stars: 17 - Forks: 4

azimonti/ma-libs

A set of libraries and tool in C++ and Fortran, developed during the years, that can be reused in other projects

Language: C++ - Size: 119 KB - Last synced at: 23 days ago - Pushed at: about 1 month ago - Stars: 1 - Forks: 0

jamesmudd/jhdf

A pure Java HDF5 library

Language: Java - Size: 4.69 MB - Last synced at: 10 days ago - Pushed at: 27 days ago - Stars: 149 - Forks: 39

nanoporetech/vbz_compression

VBZ compression plugin for nanopore signal data

Language: C++ - Size: 3.87 MB - Last synced at: 16 days ago - Pushed at: 3 months ago - Stars: 40 - Forks: 9

h5netcdf/h5netcdf

Pythonic interface to netCDF4 via h5py

Language: Python - Size: 6.99 MB - Last synced at: 5 days ago - Pushed at: about 2 months ago - Stars: 198 - Forks: 36

gjbex/training-material

A collection of code examples as well as presentations for training purposes

Language: Jupyter Notebook - Size: 184 MB - Last synced at: 15 days ago - Pushed at: 8 months ago - Stars: 125 - Forks: 54

zoj613/zarr-ml

An implementation of the Zarr storage format specification for chunked & compressed multidimensional arrays.

Language: OCaml - Size: 1.57 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 18 - Forks: 2

geosiris-technologies/energyml-python

Language: Python - Size: 3.12 MB - Last synced at: 11 days ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 1

daedalus/TBC

The Brain Collector: Find ML model weights inside Android

Language: Python - Size: 31.3 KB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0

linkml/linkml-store

wrapper for multiple linkml storage engines

Language: Python - Size: 10 MB - Last synced at: 20 days ago - Pushed at: about 1 month ago - Stars: 20 - Forks: 2

alexfikl/h5pyckle

A HDF5-based pickle-like library for object serialization.

Language: Python - Size: 309 KB - Last synced at: 4 days ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0

ubermag/discretisedfield

Python package for the analysis and visualisation of finite-difference fields.

Language: Jupyter Notebook - Size: 118 MB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 19 - Forks: 13

MTgeophysics/mth5

Exchangeable and archivable format for magnetotelluric time series to better serve the community through FAIR principles. Cloned from https://github.com/kujaku11/mth5

Language: Python - Size: 33.1 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0

ess-dmsc/h5cpp

C++ wrapper for the HDF5 C-library

Language: C++ - Size: 252 MB - Last synced at: 18 days ago - Pushed at: 3 months ago - Stars: 131 - Forks: 20

geospace-code/matlab-stdlib

HDF5, NetCDF4, fileio, system functions that act as an unofficial "stdlib" for Matlab.

Language: MATLAB - Size: 908 KB - Last synced at: 10 days ago - Pushed at: about 2 months ago - Stars: 11 - Forks: 2

pdebuyl/pyh5md

Read and write H5MD files

Language: Python - Size: 101 KB - Last synced at: 14 days ago - Pushed at: about 2 months ago - Stars: 13 - Forks: 5

hpc-io/vol-pdc

HDF5 PDC VOL Connector

Language: C - Size: 241 KB - Last synced at: 19 days ago - Pushed at: 19 days ago - Stars: 0 - Forks: 1

LLNL/H5Z-ZFP

A registered ZFP compression plugin for HDF5

Language: C - Size: 464 KB - Last synced at: 17 days ago - Pushed at: 2 months ago - Stars: 52 - Forks: 23

innerlee/setup

Setup a new machine without sudo!

Language: Shell - Size: 269 KB - Last synced at: 17 days ago - Pushed at: about 3 years ago - Stars: 445 - Forks: 78

mbsim-env/hdf5serie

A HDF5 Wrapper for Time Series

Language: C++ - Size: 697 KB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 8 - Forks: 2