GitHub topics: cellpose
okunator/cellseg_models.pytorch
Encoder-Decoder Cell and Nuclei segmentation models
Language: Python - Size: 101 MB - Last synced at: 2 days ago - Pushed at: 2 months ago - Stars: 90 - Forks: 4
PraiseTheDarkFlo/CellSePi
Segmentation of microscopy images and data analysis pipeline with a graphical user interface, powered by Cellpose.
Language: Python - Size: 46.5 MB - Last synced at: 3 days ago - Pushed at: about 1 month ago - Stars: 1 - Forks: 0
MultimodalImagingCenter/MIC-MAQ
MIC-MAQ for Microscopy Images of Cells - Multi Analyses and Quantifications is an ImageJ/Fiji Plugin for automatic segmentation of nuclei and/or cells for quantifications in other channels including foci detection
Language: Java - Size: 12.7 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 1 - Forks: 0
baltuni/Calcium-Correlation-Tool Fork of Angsas/Calcium-Correlation-Tool
Cell segmentation and tracking pipeline for time-lapse microscopy data using Cellpose. Includes segmentation, tracking, and correlation analysis of cell properties over time.
Language: Jupyter Notebook - Size: 1.41 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 3 - Forks: 0
Pablo1990/3D-deep-segmentation-protocol
Single cell resolution 3D imaging and segmentation within intact live tissues
Language: Jupyter Notebook - Size: 19 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0
cadaws/MaSCOT-AI
Mammary cell shape computation over time with Trackmate-Cellpose
Language: Python - Size: 5.31 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0
AllenNeuralDynamics/aind-large-scale-cellpose
Large-scale cell segmentation with cellpose.
Language: Python - Size: 120 KB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 4 - Forks: 0
ajinkya-kulkarni/PyOrganoIDNet
This repository provides StarDist and CellPose models, meticulously trained on a large dataset of Pancreatic Ductal Adenocarcinoma organoids co-cultured with immune cells. Pre-print available at https://www.biorxiv.org/content/10.1101/2024.02.12.580032v1. Demo application available at https://segmentorganoids.streamlit.app/
Language: Jupyter Notebook - Size: 60.9 MB - Last synced at: 13 days ago - Pushed at: 10 months ago - Stars: 2 - Forks: 0
fish-quant/fq-segmentation
Wrapper code for segmentation of cells and nuclei with Cellpose.
Language: Python - Size: 8.11 MB - Last synced at: about 1 year ago - Pushed at: almost 2 years ago - Stars: 2 - Forks: 2
ai4life-opencalls/oc-1-project-11
Open Call #1: Segmentation and Tracking of Epithelial Cells
Language: Jupyter Notebook - Size: 127 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
ai4life-opencalls/oc-1-project-6
Open Call #1: Murine Skeletal Muscle Analysis
Size: 37.4 MB - Last synced at: 9 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
abailoni/cellpose-training-gui
Graphical tool for creating image segmentation annotations and training custom Cellpose models
Language: Python - Size: 8.25 MB - Last synced at: about 2 months ago - Pushed at: 12 months ago - Stars: 3 - Forks: 0
peterlionelnewman/cellpose_wrapper
a wrapper for cellpose: contains spagetti
Language: Python - Size: 45.9 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
clintyr/bio-image-analysis
Example workflows for image processing, segmentation and analysis. Stitching and alignment functions also implemented.
Language: Jupyter Notebook - Size: 47.2 MB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0
poloarol/snakemake-vizgen-cell-segmentation
A snakemake pipeline to perform cell segmentation on MERFISH spatial transcriptomics data.
Language: Python - Size: 13.7 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
buswinka/piefs
Python Instance (map) Eikonal Function Solver
Language: Python - Size: 59.6 KB - Last synced at: about 1 month ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0
