Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub topics: merfish
li-pearl/gene-count-normalizer
First step of data wrangling in MERFISH data project
Language: Python - Size: 8.79 KB - Last synced: about 10 hours ago - Pushed: about 16 hours ago - Stars: 1 - Forks: 0
lhqing/merfishing
Code for MERFISH analysis
Language: Jupyter Notebook - Size: 196 MB - Last synced: 1 day ago - Pushed: 1 day ago - Stars: 5 - Forks: 2
HaojiaWu/CellScopes.jl
A Julia package for single cell and spatial data analysis
Language: Julia - Size: 126 MB - Last synced: 1 day ago - Pushed: 11 days ago - Stars: 19 - Forks: 2
Kur1sutaru/ruichenlabcodes
Single cell ATAC and RNA seq data analysis
Language: Jupyter Notebook - Size: 84.4 MB - Last synced: 20 days ago - Pushed: 20 days ago - Stars: 2 - Forks: 1
ankitbioinfo/nico_tutorial
A package that performs cell type annotations on single cell resolution of spatial transcriptomics data, find the niche interactions and covariation patterns between interacted cell types.
Language: Jupyter Notebook - Size: 50.9 MB - Last synced: 21 days ago - Pushed: 21 days ago - Stars: 0 - Forks: 1
poloarol/snakemake-vizgen-cell-segmentation
A snakemake pipeline to perform cell segmentation on MERFISH spatial transcriptomics data.
Language: Python - Size: 13.7 KB - Last synced: 7 months ago - Pushed: 7 months ago - Stars: 0 - Forks: 0
emanuega/MERlin
MERlin is an extensible analysis pipeline applied to decoding MERFISH data
Language: Python - Size: 16.2 MB - Last synced: 6 months ago - Pushed: over 2 years ago - Stars: 24 - Forks: 27
