GitHub topics: merfish
HaojiaWu/CellScopes.jl
A Julia package for single cell and spatial data analysis
Language: Julia - Size: 127 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 36 - Forks: 3
ankitbioinfo/nico_tutorial
A package that performs cell type annotations on single cell resolution of spatial transcriptomics data, find the niche interactions and covariation patterns between interacted cell types.
Language: Jupyter Notebook - Size: 62.5 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 6 - Forks: 3
QI2lab/merfish3d-analysis
GPU accelerated post-processing for 2D or 3D iterative barcoded FISH data.
Language: Python - Size: 3.51 MB - Last synced at: 1 day ago - Pushed at: 1 day ago - Stars: 6 - Forks: 3
emanuega/MERlin
MERlin is an extensible analysis pipeline applied to decoding MERFISH data
Language: Python - Size: 16.2 MB - Last synced at: about 2 months ago - Pushed at: over 3 years ago - Stars: 35 - Forks: 31
Kur1sutaru/ruichenlabcodes
Single cell ATAC and RNA seq data analysis
Language: Jupyter Notebook - Size: 84.4 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 2 - Forks: 1
lhqing/merfishing
Code for MERFISH analysis
Language: Jupyter Notebook - Size: 196 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 6 - Forks: 2
li-pearl/gene-count-normalizer
First step of data wrangling in MERFISH data project
Language: Python - Size: 85.9 KB - Last synced at: 3 months ago - Pushed at: 12 months ago - Stars: 1 - Forks: 0
poloarol/snakemake-vizgen-cell-segmentation
A snakemake pipeline to perform cell segmentation on MERFISH spatial transcriptomics data.
Language: Python - Size: 13.7 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
