GitHub topics: xenium
khasrawlab/TILproject
Uncovering Determinants of TIL Expansion in High-Grade Gliomas through Immunophenotyping, TCR Profiling, Single-Cell, Spatial Transcriptomics, and Proeteomics
Language: R - Size: 121 MB - Last synced at: 12 days ago - Pushed at: 12 days ago - Stars: 0 - Forks: 0
EliHei2/segger_dev
a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challenge of accurately segmenting individual cells in complex imaging datasets, leveraging a unique approach based on graph neural networks (GNNs).
Language: Python - Size: 4.81 MB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 58 - Forks: 5
HaojiaWu/CellScopes.jl
A Julia package for single cell and spatial data analysis
Language: Julia - Size: 126 MB - Last synced at: 19 days ago - Pushed at: 19 days ago - Stars: 34 - Forks: 3
TheHumphreysLab/CellScopes.jl Fork of HaojiaWu/CellScopes.jl
A Julia package for single cell and spatial data analysis
Language: Julia - Size: 96.7 MB - Last synced at: 19 days ago - Pushed at: 19 days ago - Stars: 6 - Forks: 1
MargoKapustina/XeniumSpatialAnalysis
R-based Xenium Spatial Analysis Toolkit to assess gene expression gradients
Language: R - Size: 354 KB - Last synced at: 21 days ago - Pushed at: 21 days ago - Stars: 15 - Forks: 2
10XGenomics/janesick_nature_comms_2023_companion
Code companion to the publication "High resolution mapping of the breast cancer tumor microenvironment using integrated single cell, spatial and in situ analysis of FFPE tissue"
Language: Jupyter Notebook - Size: 7.91 MB - Last synced at: 7 days ago - Pushed at: over 1 year ago - Stars: 18 - Forks: 4
kharchenkolab/Baysor
Bayesian Segmentation of Spatial Transcriptomics Data
Language: Julia - Size: 2.11 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 155 - Forks: 31
alperoglu/ASTRID
Tool for quick and standardized annotation of single cell transcriptomics data
Language: Python - Size: 120 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 1 - Forks: 0
phipsonlab/spaceMarker
Language: R - Size: 18.1 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 2 - Forks: 0
