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GitHub / emanuega / MERlin
MERlin is an extensible analysis pipeline applied to decoding MERFISH data
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/emanuega%2FMERlin
Stars: 24
Forks: 27
Open Issues: 27
License: mit
Language: Python
Repo Size: 16.2 MB
Dependencies:
33
Created: about 6 years ago
Updated: 9 months ago
Last pushed: over 2 years ago
Last synced: 6 months ago
Topics: cloud-computing, image-processing, merfish, modular, pipeline-framework, segmentation, transcriptomics
Files
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Readme
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Dependencies
requirements.txt
pypi
- Sphinx *
- boto3 *
- cython >=0.21
- docutils <0.16,>=0.10
- google-cloud-storage *
- h5py >=1.8.15
- matplotlib *
- networkx *
- numexpr >=2.6.2
- numpy >1.16.0
- opencv-python >=3
- pandas >=0.23.4
- pyclustering *
- pyqt5 *
- pytest *
- pytest-cov *
- python-dotenv >=0.8.2
- requests >=2.18.0
- rtree *
- scikit-image >=0.15.0
- scikit-learn >=0.19.0
- scipy >=1.2
- seaborn >=0.9.0
- setuptools >=36.0.0
- shapely <1.7a2
- snakemake *
- sphinx-rtd-theme *
- tables *
- tifffile >=0.14.0
- urllib3 *
- xmltodict *
setup.py
pypi