GitHub topics: napari-plugin
danionella/napari-pyav
PyAV-based video reader plugin for Napari
Language: Python - Size: 43.9 KB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 3 - Forks: 1
samthiele/napari-hippo
A large and somewhat ugly plugin for viewing and analysing hyperspectral data in Napari
Language: Python - Size: 11.9 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 8 - Forks: 2
GuignardLab/napari-sc3D-viewer
A plugin to visualise 3D spatial single cell omics
Language: Python - Size: 38.4 MB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 22 - Forks: 2
BiAPoL/napari-clusters-plotter
A napari plugin for clustering objects according to their properties.
Language: Python - Size: 144 MB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 85 - Forks: 10
jhnnsrs/faser
A python based toolkit for psf estimation using a vectorial model of the electromagnetic field
Language: Python - Size: 16.6 MB - Last synced at: 8 days ago - Pushed at: 11 days ago - Stars: 3 - Forks: 0
MercaderLabAnatomy/napari-tmidas
Batch processing of microscopy image data in Napari
Language: Python - Size: 354 KB - Last synced at: 15 days ago - Pushed at: 15 days ago - Stars: 4 - Forks: 0
wisstock/domb-napari
napari plugin for analyzing fluorescence-labeled proteins redistribution
Language: Python - Size: 20.5 MB - Last synced at: 22 days ago - Pushed at: 22 days ago - Stars: 1 - Forks: 0
scverse/napari-spatialdata
Interactive visualization of spatial omics data
Language: Python - Size: 45.4 MB - Last synced at: 23 days ago - Pushed at: 23 days ago - Stars: 58 - Forks: 18
brainglobe/brainglobe-napari-io
Read and write files from the BrainGlobe neuroanatomy suite
Language: Python - Size: 25.5 MB - Last synced at: 26 days ago - Pushed at: 26 days ago - Stars: 14 - Forks: 5
haesleinhuepf/napari-accelerated-pixel-and-object-classification
GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.
Language: Python - Size: 47.7 MB - Last synced at: 21 days ago - Pushed at: about 2 months ago - Stars: 43 - Forks: 8
saeyslab/harpy
Single-cell spatial proteomics analysis that makes you happy!
Language: Python - Size: 870 MB - Last synced at: 16 days ago - Pushed at: 16 days ago - Stars: 28 - Forks: 5
TileDB-Inc/napari-tiledb-bioimg
TileDB BioImaging plugin for Napari
Language: Python - Size: 17.4 MB - Last synced at: 9 days ago - Pushed at: 5 months ago - Stars: 9 - Forks: 0
janclemenslab/napari-video
Napari plugin for working with video files.
Language: Jupyter Notebook - Size: 30.3 KB - Last synced at: 9 days ago - Pushed at: about 1 month ago - Stars: 12 - Forks: 3
tlambert03/napari-omero
Browse your OMERO database from within napari.
Language: Python - Size: 9.68 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 37 - Forks: 14
super-resolution/napari-locan
Napari plugin to use locan methods in napari
Language: Python - Size: 4.74 MB - Last synced at: 6 days ago - Pushed at: about 1 month ago - Stars: 2 - Forks: 0
volume-em/empanada-napari
Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari
Language: Python - Size: 8.3 MB - Last synced at: 5 days ago - Pushed at: about 2 months ago - Stars: 23 - Forks: 9
matplotlib/napari-matplotlib
Linking napari layers with Matplotlib plots
Language: Python - Size: 9.11 MB - Last synced at: 4 days ago - Pushed at: about 1 month ago - Stars: 40 - Forks: 22
haesleinhuepf/napari-process-points-and-surfaces
Process and analyze surfaces using vedo in napari.
Language: Python - Size: 185 MB - Last synced at: 8 days ago - Pushed at: about 1 year ago - Stars: 24 - Forks: 4
haesleinhuepf/napari-simpleitk-image-processing
Process images using SimpleITK in napari
Language: Python - Size: 8.5 MB - Last synced at: 21 days ago - Pushed at: about 2 months ago - Stars: 21 - Forks: 4
clEsperanto/napari_pyclesperanto_assistant
GPU-accelerated general purpose image processing and image analysis in napari
Language: Python - Size: 116 MB - Last synced at: 17 days ago - Pushed at: about 2 months ago - Stars: 35 - Forks: 9
haesleinhuepf/napari-time-slicer
A meta plugin for processing timelapse data timepoint by timepoint in napari
Language: Python - Size: 36.1 MB - Last synced at: 25 days ago - Pushed at: about 2 months ago - Stars: 5 - Forks: 3
haesleinhuepf/napari-tabu
Language: Python - Size: 11.5 MB - Last synced at: 28 days ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0
haesleinhuepf/napari-skimage-regionprops
Feature extraction for labeled objects in images using regionprops from scikit-image
Language: Python - Size: 38.3 MB - Last synced at: 21 days ago - Pushed at: about 2 months ago - Stars: 50 - Forks: 13
haesleinhuepf/napari-segment-blobs-and-things-with-membranes
A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/or membranes.
Language: Python - Size: 7.69 MB - Last synced at: 21 days ago - Pushed at: about 2 months ago - Stars: 26 - Forks: 8
haesleinhuepf/napari-plugin-search
Language: Python - Size: 9.45 MB - Last synced at: 29 days ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0
haesleinhuepf/napari-mouse-controls
Control zoom, slicing and contrast windowing with mouse and touch screen
Language: Python - Size: 12 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 1 - Forks: 2
haesleinhuepf/napari-folder-browser
Language: Python - Size: 9.28 MB - Last synced at: 25 days ago - Pushed at: about 2 months ago - Stars: 7 - Forks: 2
haesleinhuepf/napari-curtain
Language: Python - Size: 3.81 MB - Last synced at: 20 days ago - Pushed at: about 2 months ago - Stars: 4 - Forks: 1
haesleinhuepf/napari-brightness-contrast
Language: Python - Size: 46.7 MB - Last synced at: 26 days ago - Pushed at: about 2 months ago - Stars: 13 - Forks: 4
haesleinhuepf/devbio-napari
Language: Python - Size: 1.65 MB - Last synced at: about 1 month ago - Pushed at: about 2 months ago - Stars: 49 - Forks: 14
BiAPoL/napari-crop
Language: Jupyter Notebook - Size: 34.1 MB - Last synced at: 17 days ago - Pushed at: 3 months ago - Stars: 10 - Forks: 4
sebi06/python_envs
This repository contains a collection of YML and/or requirments file and tricks to create Python Environments
Size: 80.1 KB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 0 - Forks: 1
hanjinliu/napari-multitask
Multitasking on napari
Language: Python - Size: 2.73 MB - Last synced at: about 3 hours ago - Pushed at: over 3 years ago - Stars: 3 - Forks: 2
haesleinhuepf/napari-plot-profile
Language: Python - Size: 14.1 MB - Last synced at: about 2 months ago - Pushed at: 2 months ago - Stars: 17 - Forks: 5
CAREamics/careamics-napari
napari plugin for CAREamics
Language: Python - Size: 229 KB - Last synced at: 6 days ago - Pushed at: 2 months ago - Stars: 4 - Forks: 2
sebi06/napari-czitools
napari plugin to open CZI image files and their metadata
Language: Python - Size: 150 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 0 - Forks: 0
EPFL-Center-for-Imaging/napari-rembg
AI-based image segmentation in Napari.
Language: Python - Size: 54.6 MB - Last synced at: 4 days ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 0
multiview-stitcher/napari-stitcher
A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher
Language: Python - Size: 24 MB - Last synced at: 10 days ago - Pushed at: 3 months ago - Stars: 16 - Forks: 5
ome/napari-ome-zarr
A napari plugin for zarr backed OME-NGFF images
Language: Python - Size: 130 KB - Last synced at: 7 days ago - Pushed at: 23 days ago - Stars: 33 - Forks: 22
LIDS-UNICAMP/grabber
Grabber: A Tool to Improve Convergence in Interactive Image Segmentation
Language: Python - Size: 31.4 MB - Last synced at: 2 months ago - Pushed at: about 2 years ago - Stars: 17 - Forks: 2
deep-finder/napari-deepfinder
A napari plugin for the DeepFinder library which includes display, annotation, target generation, segmentation and clustering functionalities. An orthoslice view has been added for an easier visualisation and annotation process.
Language: Python - Size: 5.5 MB - Last synced at: 20 days ago - Pushed at: 3 months ago - Stars: 3 - Forks: 1
junlabucsd/napari-mm3
Mother machine image analysis through napari
Language: Jupyter Notebook - Size: 20.1 MB - Last synced at: 17 days ago - Pushed at: 5 months ago - Stars: 10 - Forks: 4
stardist/stardist-napari
StarDist plugin for napari
Language: Python - Size: 1.69 MB - Last synced at: 4 days ago - Pushed at: 10 months ago - Stars: 38 - Forks: 11
chanzuckerberg/napari-hub
Discover, install, and share napari plugins
Language: TypeScript - Size: 8.48 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 51 - Forks: 18
EPFL-Center-for-Imaging/napari-magic-wand
"Magic wand" annotation in Napari.
Language: Python - Size: 26.2 MB - Last synced at: 4 days ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 0
BiAPoL/guanine-crystal-analysis
A plugin for the guanine crystal segmentation, classification and characterization in the zebrafish eye
Language: Cool - Size: 6.44 MB - Last synced at: about 1 month ago - Pushed at: about 2 years ago - Stars: 2 - Forks: 0
EPFL-Center-for-Imaging/napari-orientationpy
Analyze orientations in 2D, 3D, and RGB images in Napari.
Language: Python - Size: 9.54 MB - Last synced at: 15 days ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 0
jacopoabramo/napari-trait2d
A napari plugin for TRAIT2D, a software for quantitative analysis of single particle diffusion data
Language: Python - Size: 75.2 KB - Last synced at: 1 day ago - Pushed at: almost 3 years ago - Stars: 1 - Forks: 0
haesleinhuepf/napari-cupy-image-processing
Language: Python - Size: 10.3 MB - Last synced at: 25 days ago - Pushed at: almost 2 years ago - Stars: 22 - Forks: 0
ilastik/ilastik-napari
ilastik plugin for napari
Language: Python - Size: 2.58 MB - Last synced at: 24 days ago - Pushed at: about 1 year ago - Stars: 14 - Forks: 3
bwmr/napari-segselect
Napari Plugin to clean membrain-seg segmentations
Language: Python - Size: 678 KB - Last synced at: 7 days ago - Pushed at: 5 months ago - Stars: 2 - Forks: 0
palvarezc/cavendish-particle-tracks
A Napari plugin to perform a simple particle tracking analysis for the Cavendish laboratory's Undergraduate Part II Particle Tracks experiment.
Language: Python - Size: 91.6 MB - Last synced at: 21 days ago - Pushed at: 22 days ago - Stars: 2 - Forks: 0
PolusAI/bfio
Interface to the Bioformats Java library
Language: Python - Size: 60.5 MB - Last synced at: 11 days ago - Pushed at: 5 months ago - Stars: 13 - Forks: 8
haesleinhuepf/natari
Napari gaming
Language: Python - Size: 46.9 MB - Last synced at: 25 days ago - Pushed at: over 3 years ago - Stars: 17 - Forks: 0
hanjinliu/napari-text-layer
Text layer for bio-image annotation.
Language: Python - Size: 3.47 MB - Last synced at: 17 days ago - Pushed at: over 3 years ago - Stars: 7 - Forks: 2
sylvainprigent/napari-stracking
Napari plugin for particles tracking
Language: Python - Size: 70.2 MB - Last synced at: about 1 month ago - Pushed at: about 1 year ago - Stars: 7 - Forks: 5
gatoniel/napari-3d-ortho-viewer
Napari 3D Ortho Viewer - an ortho viewer for napari for 3D images
Language: Python - Size: 2.68 MB - Last synced at: 6 days ago - Pushed at: over 1 year ago - Stars: 9 - Forks: 2
EPFL-Center-for-Imaging/napari-adaptive-painting
Propagate label annotations in Napari.
Language: Python - Size: 20.5 MB - Last synced at: 17 days ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 1
haesleinhuepf/napari-animated-gif-io
Open and save 3D image stacks as animated gifs in napari
Language: Python - Size: 6.57 MB - Last synced at: about 2 months ago - Pushed at: over 2 years ago - Stars: 5 - Forks: 2
MBPhys/napari-medical-image-formats
A napari plugin in order to read and write medical image formats such as DICOM, DICOM Series and NIfTI
Language: Python - Size: 21.5 KB - Last synced at: 29 days ago - Pushed at: over 3 years ago - Stars: 7 - Forks: 0
haesleinhuepf/napari-layer-details-display
Language: Python - Size: 261 KB - Last synced at: about 2 months ago - Pushed at: over 2 years ago - Stars: 3 - Forks: 1
Chris-N-K/napari-time-series-plotter
A napari Plugin for visualisaton of pixel values over time (t+ nD) as graphs.
Language: Python - Size: 32.2 MB - Last synced at: 1 day ago - Pushed at: about 1 year ago - Stars: 11 - Forks: 5
brainglobe/cellfinder-napari 📦
Efficient cell detection in large images using cellfinder in napari
Language: Python - Size: 34.3 MB - Last synced at: 26 days ago - Pushed at: over 1 year ago - Stars: 23 - Forks: 6
EPFL-Center-for-Imaging/napari-label-focus
Easily focus the view on selected elements from a Labels layer.
Language: Python - Size: 44.3 MB - Last synced at: 8 days ago - Pushed at: 7 months ago - Stars: 0 - Forks: 0
PolarizedLightFieldMicroscopy/napari-LF
Light field imaging plugin for napari
Language: Python - Size: 103 MB - Last synced at: 1 day ago - Pushed at: 7 months ago - Stars: 9 - Forks: 3
InsightSoftwareConsortium/napari-itk-io
File IO with itk for napari.
Language: Python - Size: 42 KB - Last synced at: 4 days ago - Pushed at: 7 months ago - Stars: 7 - Forks: 3
EPFL-Center-for-Imaging/mousetumornet
A model for lung tumor nodules segmentation in mice CT scans.
Language: Python - Size: 3.23 MB - Last synced at: about 1 month ago - Pushed at: 8 months ago - Stars: 0 - Forks: 0
SuperElastix/elastix-napari
A napari plugin for itk-elastix
Language: Python - Size: 158 KB - Last synced at: 14 days ago - Pushed at: about 1 year ago - Stars: 38 - Forks: 8
hiroalchem/napari-labelimg4classification
A simple image-level annotation tool supporting multi-channel images for napari.
Language: Python - Size: 7.75 MB - Last synced at: 9 days ago - Pushed at: over 3 years ago - Stars: 6 - Forks: 2
EPFL-Center-for-Imaging/mouselungseg
Lungs segmentation in mice CT scans
Language: Python - Size: 806 KB - Last synced at: 3 days ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0
mpicbg-csbd/napari-kics
A plugin to estimate chromosome sizes from karyotype images.
Language: Python - Size: 8.15 MB - Last synced at: 9 months ago - Pushed at: about 3 years ago - Stars: 6 - Forks: 0
MontpellierRessourcesImagerie/napari-J
Connect Napari with FIJI/ImageJ
Language: Python - Size: 130 KB - Last synced at: 7 days ago - Pushed at: 11 months ago - Stars: 2 - Forks: 2
EPFL-Center-for-Imaging/napari-floodfill
Interactive object annotation in Napari using a flood fill tool.
Language: Python - Size: 8.03 MB - Last synced at: 7 days ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0
haesleinhuepf/napari-script-editor
A python script editor plugin for napari
Language: Python - Size: 34.7 MB - Last synced at: 23 days ago - Pushed at: almost 2 years ago - Stars: 11 - Forks: 0
marx-alex/napari-bleach-correct
Napari Photobleach Correction
Language: Python - Size: 3.32 MB - Last synced at: 6 days ago - Pushed at: almost 3 years ago - Stars: 4 - Forks: 0
arkitektio-apps/mikro-napari
napari within the mikro environment
Language: Python - Size: 1.04 MB - Last synced at: 6 days ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0
alexisjapas/napari-vesicles-segmentation 📦
A simple plugin to detect vesicles in cells images.
Language: Python - Size: 1.19 MB - Last synced at: 9 days ago - Pushed at: almost 3 years ago - Stars: 5 - Forks: 0
EPFL-Center-for-Imaging/napari-z-plotter
Interactively plot the image intensity along the depth axis of a 3D image dataset.
Language: Python - Size: 2.61 MB - Last synced at: 27 days ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 1
AllenCell/napari-allencell-segmenter
A plugin that enables image segmentation provided by Allen Institute for Cell Science
Language: Python - Size: 841 KB - Last synced at: 10 months ago - Pushed at: over 1 year ago - Stars: 16 - Forks: 6
shibarjun/napari-findaureus
napari-findaureus: A tool designed to identify bacteria in infected bone tissue images obtained via Confocal Laser Scanning Microscopy (CLSM).
Language: Python - Size: 111 MB - Last synced at: 28 days ago - Pushed at: 28 days ago - Stars: 0 - Forks: 0
brainglobe/napari-brainreg-standard 📦
Visualise brainreg registration output in standard space
Language: Python - Size: 13.5 MB - Last synced at: about 16 hours ago - Pushed at: almost 5 years ago - Stars: 7 - Forks: 0
hanjinliu/napari-macrokit
Executable script generation for napari plugins
Language: Python - Size: 2.9 MB - Last synced at: about 1 month ago - Pushed at: over 2 years ago - Stars: 3 - Forks: 1
haesleinhuepf/napari-blender-bridge
Transfer surface layers between Napari and Blender.
Language: Python - Size: 13.4 MB - Last synced at: 22 days ago - Pushed at: about 2 years ago - Stars: 8 - Forks: 1
haesleinhuepf/napari-laptrack
Tracking particles in Napari, using the LapTrack library
Language: Python - Size: 8.59 MB - Last synced at: 7 days ago - Pushed at: about 2 years ago - Stars: 6 - Forks: 1
DKFZ-TMTRR/Partial-Aligner
Partial-Aligner is a napari plugin used for manual registration and histology slide repair
Language: Python - Size: 2.34 MB - Last synced at: about 5 hours ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0
MBPhys/Image-Composer
A napari plugin in order to compose a background image with a foreground image
Language: Python - Size: 13.7 KB - Last synced at: 17 days ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0
hereariim/napari-aphid
This directory contains all the elements and structure of the napari-aphid plugin
Language: Python - Size: 265 MB - Last synced at: 7 months ago - Pushed at: almost 2 years ago - Stars: 3 - Forks: 0
EPFL-Center-for-Imaging/napari-remove-objects
A simple tool to remove objects in a Labels layer in Napari by clicking on them.
Language: Python - Size: 474 KB - Last synced at: 20 days ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
EPFL-Center-for-Imaging/napari-live-histogram
Display the image histogram in Napari.
Language: Python - Size: 4.37 MB - Last synced at: about 17 hours ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
adrtsc/napari-blob-detection
napari plugin for blob detection in images
Language: Python - Size: 222 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 5 - Forks: 4
hereariim/napari-pixel-correction
This directory contains the files that make up the napari-pixel-correction module. This module is used to annotate the segmentation masks.
Language: Python - Size: 5.11 MB - Last synced at: 27 days ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 0
half-adder/napari-xarray
A plugin to let napari read and write xarray DataArrays
Language: Python - Size: 26.4 KB - Last synced at: almost 2 years ago - Pushed at: almost 5 years ago - Stars: 0 - Forks: 0
haesleinhuepf/napari-mahotas-image-processing
Language: Python - Size: 1.25 MB - Last synced at: 29 days ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0
hereariim/napari-caphid
Napari-caphid was developed for updating table of quantitative data from images. Napari-caphid was developed by Imhorphen Team ( 🇫🇷 french team of University of Angers and INRAe Angers) for ECLECTIC Team (french team of University of Paris-Saclay and CNRS).
Language: Python - Size: 18.6 KB - Last synced at: 11 months ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0
pranjaldhole/napari-labelling-assistant
A lightweight plugin for visualizing labelling statistics.
Language: Python - Size: 52.7 KB - Last synced at: 3 months ago - Pushed at: almost 3 years ago - Stars: 1 - Forks: 2
rdemets/napari-yolov5
Language: Python - Size: 94.5 MB - Last synced at: 16 days ago - Pushed at: over 2 years ago - Stars: 7 - Forks: 1
rezaakb/napari-seedseg
A simple interactive segmentation plugin for napari.
Language: Python - Size: 73.2 KB - Last synced at: 15 days ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
sylvainprigent/napari-tracks-reader
napari reader plugin for tracking
Language: Python - Size: 295 KB - Last synced at: 11 days ago - Pushed at: over 3 years ago - Stars: 7 - Forks: 2
mesoSPIM/mesoSPIM-lazy-loader
Lazy loader napari plugin for mesoSPIM datasets
Language: Python - Size: 1.38 MB - Last synced at: almost 2 years ago - Pushed at: about 2 years ago - Stars: 2 - Forks: 0
haesleinhuepf/napari-workflow-optimizer
Optimize image processing workflows in napari
Language: Python - Size: 28 MB - Last synced at: about 2 months ago - Pushed at: almost 3 years ago - Stars: 17 - Forks: 2