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GitHub / pdimens / harpy

Process raw haplotagging data, from raw sequences to phased haplotypes, batteries included.

JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/pdimens%2Fharpy

Stars: 9
Forks: 1
Open Issues: 4

License: gpl-3.0
Language: Python
Repo Size: 386 MB
Dependencies: 30

Created: over 1 year ago
Updated: 16 days ago
Last pushed: about 16 hours ago
Last synced: 9 minutes ago

Topics: bioinformatics, haplotype, linked-reads, pipeline, sequencing, variant-calling

Files
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    Readme
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    Dependencies
    .github/workflows/align.yml actions
    .github/workflows/demux.yml actions
    .github/workflows/extras.yml actions
    .github/workflows/impute.yml actions
    .github/workflows/phase.yml actions
    .github/workflows/preflight.yml actions
    .github/workflows/qc.yml actions
    pyproject.toml pypi
    setup.py pypi
    resources/DEPRECATED/container/R/Dockerfile docker
    resources/DEPRECATED/container/align/Dockerfile docker
    resources/DEPRECATED/container/impute/Dockerfile docker
    resources/DEPRECATED/container/phase/Dockerfile docker
    resources/DEPRECATED/container/qc/Dockerfile docker
    resources/DEPRECATED/container/variants.snp/Dockerfile docker
    resources/DEPRECATED/container/variants.sv/Dockerfile docker
    .github/workflows/createrelease.yml actions
    .github/workflows/variants_snp.yml actions
    .github/workflows/variants_sv.yml actions
    .github/workflows/simulate_variants.yml actions