GitHub topics: read-alignments
Mangul-Lab-USC/review-technology-dictates-algorithms
A systematic survey of algorithmic foundations and methodologies across 107 alignment methods (1988-2021), for both short and long reads. We provide a rigorous experimental evaluation of 11 read aligners to demonstrate the effect of these underlying algorithms on speed and efficiency of read alignment. Described by Alser et al. at https://arxiv.org/abs/2003.00110.
Language: Jupyter Notebook - Size: 44.6 MB - Last synced at: 10 months ago - Pushed at: almost 4 years ago - Stars: 6 - Forks: 3
svkazakov/ra-visualizer
Genome read alignments visualizer
Language: Python - Size: 5.31 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
