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GitHub topics: taxdump
shenwei356/taxonkit
A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV
Language: Go - Size: 14.1 MB - Last synced: 5 days ago - Pushed: about 1 month ago - Stars: 341 - Forks: 29
CVUA-RRW/taxidTools
Python library to deal with taxonomic IDs and lineages from the NCBI's Taxdump files
Language: Python - Size: 550 KB - Last synced: 11 days ago - Pushed: 12 days ago - Stars: 0 - Forks: 1
zyxue/ncbitax2lin
🐞 Convert NCBI taxonomy dump into lineages
Language: Python - Size: 355 KB - Last synced: 26 days ago - Pushed: about 2 years ago - Stars: 129 - Forks: 28
shenwei356/gtdb-taxdump
GTDB taxonomy taxdump files with trackable TaxIds
Language: R - Size: 329 KB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 40 - Forks: 2
shenwei356/bio
A lightweight and high-performance bioinformatics package in Golang
Language: Go - Size: 1.85 MB - Last synced: 5 days ago - Pushed: 3 months ago - Stars: 88 - Forks: 9
shenwei356/taxid-changelog
NCBI taxonomic identifier (taxid) changelog, including taxids deletion, new adding, merge, reuse, and rank/name changes.
Language: R - Size: 3.31 MB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 21 - Forks: 1
shenwei356/ictv-taxdump
NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)
Size: 15.6 KB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 12 - Forks: 0
guyleonard/taxdump_edit
:seedling: :arrow_right: :deciduous_tree: Add new taxa or taxonomic groups to the NCBI Taxdump files
Language: Perl - Size: 23.4 KB - Last synced: about 1 year ago - Pushed: about 4 years ago - Stars: 12 - Forks: 2
