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GitHub / shenwei356 / bio
A lightweight and high-performance bioinformatics package in Golang
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/shenwei356%2Fbio
Stars: 88
Forks: 9
Open Issues: 0
License: mit
Language: Go
Repo Size: 1.85 MB
Dependencies:
599
Created: about 11 years ago
Updated: 3 months ago
Last pushed: 3 months ago
Last synced: 5 days ago
Commit Stats
Commits: 236
Authors: 5
Mean commits per author: 47.2
Development Distribution Score: 0.068
More commit stats: https://commits.ecosyste.ms/hosts/GitHub/repositories/shenwei356/bio
Topics: bioinformatics, golang, minimizer, package, scaled-minhash, sequence, syncmer, taxdump, taxonomy
Funding links: http://paypal.me/shenwei356
Files
Dependencies
- github.com/cznic/mathutil v0.0.0-20181122101859-297441e03548
- github.com/cznic/sortutil v0.0.0-20181122101858-f5f958428db8
- github.com/edsrzf/mmap-go v1.0.0
- github.com/klauspost/compress v1.15.0
- github.com/klauspost/pgzip v1.2.5
- github.com/remyoudompheng/bigfft v0.0.0-20200410134404-eec4a21b6bb0
- github.com/shenwei356/breader v0.3.1
- github.com/shenwei356/kmers v0.1.0
- github.com/shenwei356/util v0.5.0
- github.com/shenwei356/xopen v0.2.1
- github.com/twotwotwo/sorts v0.0.0-20160814051341-bf5c1f2b8553
- github.com/ulikunitz/xz v0.5.10
- github.com/will-rowe/nthash v0.4.0
- github.com/zeebo/wyhash v0.0.1
- golang.org/x/sys v0.0.0-20210510120138-977fb7262007