GitHub topics: sarscov2
cbg-ethz/V-pipe
V-pipe is a pipeline designed for analysing NGS data of short viral genomes
Language: Jupyter Notebook - Size: 17.4 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 136 - Forks: 46
hodcroftlab/covariants
Real-time updates and information about key SARS-CoV-2 variants, plus the scripts that generate this information.
Language: Python - Size: 1.15 GB - Last synced at: 10 days ago - Pushed at: 11 days ago - Stars: 320 - Forks: 110
maximilianh/multiSub
Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input directory and merges everything into a single output directory. Auto-detects input file formats. Can submit the results to multiple repositories from the command line.
Language: Python - Size: 1020 KB - Last synced at: 9 months ago - Pushed at: almost 3 years ago - Stars: 35 - Forks: 2
ykursadkaya/covidbot 📦
COVID-19 Turkey API and Telegram Bot
Language: Python - Size: 78.1 KB - Last synced at: about 1 year ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0
ykursadkaya/covid19-turkey-api
COVID-19 Turkey API
Language: Python - Size: 41 KB - Last synced at: about 1 year ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 0
heznanda/scrnaseq-hybrid-cov2
Single Cell RNA Sequencing with Hybrid Pipeline
Language: R - Size: 24.4 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0
emvivas/sarscov2origin
Analysis of the origin of SARS-COV 2, how could this pandemic have started?
Language: HTML - Size: 1.12 MB - Last synced at: 2 months ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
erdidogan/SARS-CoV-2 📦
Covid19 UI | Local Data Tracker & Compare the number of deaths in Countries
Language: Vue - Size: 2.31 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 14 - Forks: 0
estamos/COVID-19-GR-DATA 📦
SARS-CoV-2 data from Greece | GR | EN
Size: 90.8 MB - Last synced at: almost 2 years ago - Pushed at: over 4 years ago - Stars: 3 - Forks: 0
MirandaBeatriz/bioinformatics-pipeline-to-assist-in-the-assembly-and-analysis-of-SARS-COV-2
Trabalho de conclusão de curso, com o objetivo de desenvolver um pipeline que auxilie decisões de estudos epidemiológicos, além de possíveis análises e diagnósticos laboratoriais.
Language: Shell - Size: 4.88 KB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0
swarna0712/Covid-19-Sentimental-Ananlysis-Python-Datascience
Covid-19 Sentimental Analysis of Twitter Dataset using Python and Tweepy Library
Language: Jupyter Notebook - Size: 1 MB - Last synced at: almost 2 years ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0
mrc-ide/sarscov2-b.1.1.7
Assessing transmissibility of SARS-CoV-2 lineage B.1.1.7 in England (peer-reviewed)
Language: HTML - Size: 13.4 MB - Last synced at: 16 days ago - Pushed at: about 4 years ago - Stars: 4 - Forks: 6
QIDSOD/QIDSOD-documentation
Documentation related to the project "Quantifying the Impact of Data Sharing on Outbreak Dynamics" (QIDSOD)
Size: 252 KB - Last synced at: almost 2 years ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0
jfcaro/Vacunacion_COVID_19_ESP
Vacunacion COVID19 España
Language: Jupyter Notebook - Size: 61.5 KB - Last synced at: almost 2 years ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0
ArthurVM/TreeMer
A simple tool to generate hierarchical clustering trees from nucleotide sequences. Supports a number of distance metrics and clustering algorithms. Includes a large testset of SARSCOV2 genomes.
Language: Python - Size: 753 KB - Last synced at: about 2 years ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 1
