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GitHub topics: gisaid-upload

yashpandey007/csv-everything

🖼️ Convert images of tables or charts into downloadable CSV files effortlessly with the CSV Everything Chrome Extension using the OpenRouter API.

Language: HTML - Size: 1.3 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 0 - Forks: 0

CDCgov/seqsender

Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories

Language: Python - Size: 261 MB - Last synced at: 10 days ago - Pushed at: 10 days ago - Stars: 38 - Forks: 14

maximilianh/multiSub

Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input directory and merges everything into a single output directory. Auto-detects input file formats. Can submit the results to multiple repositories from the command line.

Language: Python - Size: 1020 KB - Last synced at: about 1 year ago - Pushed at: over 3 years ago - Stars: 35 - Forks: 2

Related Keywords
genbank 3 gisaid-format 3 gisaid-upload 3 gisaid-uploader 3 ena 2 fasta 2 gisaid-xls 2 meta-data 2 tsv 2 ncbi 2 ncbi-ftp 2 sarscov2 2 gisaid 1 ncbi-biosamples 1 ncbi-genbank 1 ncbi-sra 1 ncbi-submission 1 ncird 1 ncird-id 1 seqsender 1 sra 1 sars-cov-2 1 cdc-influenza-division 1 cdc 1 biosample 1 bioinformatics-pipeline 1 php 1 multilanguage 1 library 1 laravel 1 language 1 csv 1