GitHub topics: gisaid-uploader
CDCgov/seqsender
Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories
Language: Python - Size: 261 MB - Last synced at: 13 days ago - Pushed at: 18 days ago - Stars: 35 - Forks: 14
maximilianh/multiSub
Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input directory and merges everything into a single output directory. Auto-detects input file formats. Can submit the results to multiple repositories from the command line.
Language: Python - Size: 1020 KB - Last synced at: 9 months ago - Pushed at: almost 3 years ago - Stars: 35 - Forks: 2
