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GitHub / CDCgov / seqsender

Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories

JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/CDCgov%2Fseqsender

Stars: 29
Forks: 9
Open Issues: 8

License: apache-2.0
Language: Python
Repo Size: 83.9 MB
Dependencies: 17

Created: almost 3 years ago
Updated: 3 days ago
Last pushed: 3 days ago
Last synced: 3 days ago

Topics: bioinformatics-pipeline, biosample, cdc, cdc-influenza-division, genbank, gisaid, gisaid-format, gisaid-upload, gisaid-uploader, ncbi-biosamples, ncbi-genbank, ncbi-sra, ncbi-submission, ncird, ncird-id, seqsender, sra

Files

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Readme

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Dependencies

.github/workflows/codeql.yml actions

actions/checkout v4 composite
github/codeql-action/analyze v3 composite
github/codeql-action/autobuild v3 composite
github/codeql-action/init v3 composite

.github/workflows/pkgdown.yaml actions

JamesIves/github-pages-deploy-action v4.4.1 composite
actions/checkout v3 composite
r-lib/actions/setup-pandoc v2 composite
r-lib/actions/setup-r v2 composite
r-lib/actions/setup-r-dependencies v2 composite

DESCRIPTION cran

Dockerfile docker

base latest build
mambaorg/micromamba ${micromamba_version} build
ubuntu focal build

setup.py pypi

.github/workflows/GHCR_docker.yml actions

actions/checkout v3 composite
docker/build-push-action 0565240e2d4ab88bba5387d719585280857ece09 composite
docker/login-action 343f7c4344506bcbf9b4de18042ae17996df046d composite
docker/metadata-action 96383f45573cb7f253c731d3b3ab81c87ef81934 composite

.github/workflows/docker_test_build.yml actions

actions/checkout v3 composite