nextstrain/WNV

the repository used to build West Nile Virus for nextstrain

Language: Python - Size: 12.2 MB - Last synced at: about 20 hours ago - Pushed at: about 21 hours ago - Stars: 4 - Forks: 1

nextstrain/seasonal-flu

Scripts. config, and snakefiles for seasonal-flu nextstrain builds

Language: Python - Size: 2.48 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 50 - Forks: 28

neherlab/nextclade_data_workflows

Language: Python - Size: 6.87 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 4 - Forks: 1

nextstrain/hmpv

Human metapneumovirus pathogen build

Language: Python - Size: 3.04 MB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 0 - Forks: 0

nextstrain/mpox

Nextstrain build for mpox virus

Language: Python - Size: 33.3 MB - Last synced at: 2 days ago - Pushed at: 9 days ago - Stars: 46 - Forks: 21

nextstrain/seasonal-cov

Nextstrain build for seasonal coronaviruses

Language: Python - Size: 2.42 MB - Last synced at: 10 days ago - Pushed at: 10 days ago - Stars: 1 - Forks: 0

nextstrain/conda-base

Conda package build for nextstrain-base

Language: Shell - Size: 105 KB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 1 - Forks: 1

nextstrain/yellow-fever

Language: Python - Size: 5.28 MB - Last synced at: 11 days ago - Pushed at: 11 days ago - Stars: 1 - Forks: 4

nextstrain/mumps

Nextstrain build for mumps virus

Language: Python - Size: 380 KB - Last synced at: about 13 hours ago - Pushed at: about 15 hours ago - Stars: 2 - Forks: 5

nextstrain/forecasts-ncov

SARS-CoV-2 variant growth rates and frequency forecasts

Language: Python - Size: 2.25 MB - Last synced at: 15 days ago - Pushed at: 15 days ago - Stars: 7 - Forks: 2

nextstrain/nextclade

Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement

Language: Rust - Size: 59 MB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 229 - Forks: 61

nextstrain/ncov

Nextstrain build for SARS-CoV-2

Language: Python - Size: 28.4 MB - Last synced at: 17 days ago - Pushed at: 17 days ago - Stars: 1,353 - Forks: 406

hodcroftlab/covariants

Real-time updates and information about key SARS-CoV-2 variants, plus the scripts that generate this information.

Language: Python - Size: 1.15 GB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 320 - Forks: 110

nextstrain/rsv

Workflow for RSV analyses on Nextstrain.org

Language: Python - Size: 9.72 MB - Last synced at: 23 days ago - Pushed at: 23 days ago - Stars: 8 - Forks: 4

nextstrain/zika

Nextstrain build for Zika virus

Language: Python - Size: 381 KB - Last synced at: 24 days ago - Pushed at: 24 days ago - Stars: 8 - Forks: 10

nextstrain/measles

Nextstrain build for measles virus

Language: Python - Size: 8.39 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 1 - Forks: 7

nextstrain/ncov-ingest

A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV rebuilds.

Language: Python - Size: 402 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 36 - Forks: 20

nextstrain/ncov-clades-schema

Renders SVG schema of SARS-CoV-2 clade as defined by Nextstrain

Language: JavaScript - Size: 378 KB - Last synced at: about 1 month ago - Pushed at: 2 months ago - Stars: 14 - Forks: 8

nextstrain/lassa

Nextstrain build for Lassa virus

Language: Python - Size: 414 KB - Last synced at: 12 days ago - Pushed at: 12 days ago - Stars: 0 - Forks: 5

nextstrain/nipah

Language: Python - Size: 181 KB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 0 - Forks: 0

BCCDC-PHL/fluflo

Nextflow pipeline for generation of phylogenetic trees to be visualized in Auspice.

Language: Nextflow - Size: 1.59 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 8 - Forks: 4

nextstrain/rabies

Language: Python - Size: 151 KB - Last synced at: about 1 month ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0

nextstrain/oropouche

Oropouche Nextstrain build

Language: Python - Size: 273 KB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 1 - Forks: 0

nextstrain/avian-flu

Nextstrain build for avian influenza viruses

Language: Python - Size: 2.87 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 19 - Forks: 7

ashutoshanand13/CoronaVirus

Collective list of active repositories providing tracking as well as datasets to defeat and restrict the widespread of Novel CoronaVirus

Size: 47.9 KB - Last synced at: 11 months ago - Pushed at: about 5 years ago - Stars: 2 - Forks: 0

neherlab/spike-only

Spike-only SARS-CoV-2 Nextstrain build

Language: Python - Size: 272 KB - Last synced at: about 1 month ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 0

aicbu/AICBU

Repository for Allergy Immunology and Cell Biology Unit (AICBU), University of Sri Jayewardenepura, Sri Lanka.

Language: R - Size: 2.15 MB - Last synced at: over 1 year ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0

aicbu/AICBU_ncov

Nextstrain build configuration for maintaining https://nextstrain.org/community/aicbu/ncov/srilanka

Language: Python - Size: 2.09 MB - Last synced at: over 1 year ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0

neherlab/BA286

BA.2.86 project with Sigal lab

Language: Python - Size: 373 KB - Last synced at: about 1 month ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 1

DEIB-GECO/VariantHunter Fork of LucaCilibrasi/VariantHunter

VariantHunter is a tool for fast detection of emerging SARS-CoV-2 variants. It's an highly flexible and user friendly application for the systematic monitoring of the evolution of SARS-CoV-2 both at global and regional level.

Language: Vue - Size: 63.6 MB - Last synced at: 8 months ago - Pushed at: about 2 years ago - Stars: 5 - Forks: 3

BCCDC-PHL/covflo

Nextflow pipeline for generation of BCCDC routine SARS-CoV-2 phylogenetic trees to be visualized with Auspice.

Language: Python - Size: 1.6 MB - Last synced at: 11 months ago - Pushed at: about 1 year ago - Stars: 2 - Forks: 2

matt-sd-watson/nextflow_for_nextstrain

Parallelization of Nextstrain builds and parameter testing using Nextflow

Language: Nextflow - Size: 2.08 MB - Last synced at: about 2 years ago - Pushed at: almost 3 years ago - Stars: 1 - Forks: 0

nahid18/ncov-bd

interactive maximum-likelihood phylogenies for SARS-CoV-2 genomes and variants of concern from Bangladesh

Size: 2.76 MB - Last synced at: about 2 years ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

LeonBernieniv/genncov

gentoo portage overlay for nextstrain.org/ncov building.

Language: Shell - Size: 17.6 KB - Last synced at: 5 months ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 0