GitHub topics: sars-cov-2-variants
corneliusroemer/rki-abwasser-reports
Easy to view version of RKI SARS-CoV-2 wastewater surveillance reports
Language: HTML - Size: 129 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 1 - Forks: 0
sars-cov-2-variants/lineage-proposals
Repository to propose and discuss lineages
Language: Python - Size: 797 KB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 49 - Forks: 3
nextstrain/forecasts-ncov
SARS-CoV-2 variant growth rates and frequency forecasts
Language: Python - Size: 2.25 MB - Last synced at: 20 days ago - Pushed at: 20 days ago - Stars: 7 - Forks: 2
neherlab/SARS-CoV-2_variant-reports
Informal summaries of notable SARS-CoV-2 lineages
Size: 40.1 MB - Last synced at: 21 days ago - Pushed at: 22 days ago - Stars: 108 - Forks: 12
PRO-HOSPITAL/sars-cov-2-mutation-reports
Datové sady mutací viru Sars-Cov-2 zjištěných Diskriminačními RT-PCR testy v ČR a to převážně z laboratoří ve FNB.
Size: 13.7 KB - Last synced at: 7 months ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0
deevvan/DeewanBajracharya
Git Repository for Observations of COVID-19 vaccine coverage and vaccine hesitancy on COVID-19 outbreak: An American ecological study
Language: R - Size: 1.57 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
InstitutoTodosPelaSaude/respat_snakemake
Pipeline for analyses of multiple pathogens, like SARS-CoV-2 with positivity rate analyses
Language: Python - Size: 36.7 MB - Last synced at: 12 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
GiancarloCroce/DCA_SARS-CoV-2
Epistatic models predict mutable sites in SARS-CoV-2 proteins and epitopes
Language: Jupyter Notebook - Size: 94.8 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 3 - Forks: 1
broadinstitute/bvas
bvas: bayesian viral allele selection
Language: Python - Size: 12.4 MB - Last synced at: 10 months ago - Pushed at: 11 months ago - Stars: 8 - Forks: 2
CovSeqCH/SequencingStats_and_Variants
Download raw data and turn it into useful dataset
Language: Python - Size: 916 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 5 - Forks: 0
3dgiordano/SARS-CoV-2-Variants
This project tries to give a glimpse of the different variants of SAR-CoV-2 in the world.
Language: Python - Size: 395 MB - Last synced at: 23 days ago - Pushed at: over 1 year ago - Stars: 7 - Forks: 2
neherlab/spike-only
Spike-only SARS-CoV-2 Nextstrain build
Language: Python - Size: 272 KB - Last synced at: about 1 month ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 0
neherlab/BA286
BA.2.86 project with Sigal lab
Language: Python - Size: 373 KB - Last synced at: about 1 month ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 1
DEIB-GECO/VariantHunter Fork of LucaCilibrasi/VariantHunter
VariantHunter is a tool for fast detection of emerging SARS-CoV-2 variants. It's an highly flexible and user friendly application for the systematic monitoring of the evolution of SARS-CoV-2 both at global and regional level.
Language: Vue - Size: 63.6 MB - Last synced at: 8 months ago - Pushed at: about 2 years ago - Stars: 5 - Forks: 3
charlesfoster/deletion_detector
A simple program that uses parallel processing to detect deletions in fasta files relative to a reference genome.
Language: Python - Size: 31.3 KB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0
PRO-OC/stats-mutations-and-lineages
Zobrazuje data pocházející z období 1.9.2021 - 8.2.2022 z VFN a FNB (Delta podzim a Omikron počátek roku). Data obsahují detekované mutace diskriminačními PCR testy, jejich rozložení v čase a srovnání s celogenomově sekvenovanými vzorky ze stejného období co se týče pohlaví.
Size: 460 KB - Last synced at: 2 months ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
PRO-OC/pro-oc-mutation-finder-vfn-reports
Datové sady mutací viru Sars-Cov-2 zjištěných Diskriminačními RT-PCR testy v ČR a to převážně z laboratoří ve VFN.
Size: 39.1 KB - Last synced at: 2 months ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
MDU-PHL/covid-venn
Shiny app for creating Venn diagrams of SARS-CoV-2 variant/lineage mutations.
Language: R - Size: 468 KB - Last synced at: 7 days ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0
gencorefacility/MAD
Minor Allele Detection Pipeline for SARS-CoV2
Language: Python - Size: 3.31 MB - Last synced at: about 2 years ago - Pushed at: almost 4 years ago - Stars: 1 - Forks: 1
PRO-OC/pro-oc-mutation-finder
Rozšíření do prohlížeče obsahující automatický skript vypisující všechny odhalené mutace.
Language: JavaScript - Size: 685 KB - Last synced at: about 2 months ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0