GitHub topics: tandem-ms
Allarione/MSAnnika-docs
🌐 Build and browse the MS Annika webpage using Nextra for streamlined documentation and easy access to project resources.
Size: 89.8 KB - Last synced at: 1 day ago - Pushed at: 1 day ago - Stars: 0 - Forks: 0
spectra-to-knowledge/SpectraToQueries
Repository to translate spectra to queries
Language: R - Size: 3.4 MB - Last synced at: 2 days ago - Pushed at: 16 days ago - Stars: 1 - Forks: 1
BAMeScience/fiora
Meet FIORA! An in silico fragmentation algorithm designed to predict tandem mass spectra (MS/MS) with high accuracy. Using graph neural networks, FIORA models bond cleavages, fragment intensities, and estimates retention times (RT) and collision cross sections (CCS).
Language: Jupyter Notebook - Size: 134 MB - Last synced at: 12 days ago - Pushed at: 12 days ago - Stars: 37 - Forks: 7
BAMeScience/Mistle
Mistle is a fast spectral search engine. It uses a fragment-indexing technique and SIMD intrinsics to match experimental MS2 spectra to large spectral libraries at a high performance.
Language: C++ - Size: 146 MB - Last synced at: 15 days ago - Pushed at: almost 2 years ago - Stars: 15 - Forks: 2
hgb-bin-proteomics/MSAnnika_Spectral_Library_exporter
Generate a spectral library for Spectronaut from MS Annika results.
Language: Python - Size: 7.78 MB - Last synced at: 10 days ago - Pushed at: 10 days ago - Stars: 0 - Forks: 1
yufongpeng/MassSpecChemicals.jl
Representing chemicals and ions in mass spectrometry
Language: Julia - Size: 227 KB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0
hgb-bin-proteomics/MSAnnika
MS Annika is a crosslink search engine based on MS Amanda, aimed at identifying crosslinks of cleavable and non-cleavable crosslinkers from MS2 and MS3 spectra.
Size: 119 MB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 7 - Forks: 0
hgb-bin-proteomics/MSAnnika_exporters 📦
Export MS Annika crosslink results to different formats.
Language: Python - Size: 160 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 4 - Forks: 0
hgb-bin-proteomics/MSAnnika_Extensions
List of all available extensions for our cross-linking search engine MS Annika.
Size: 6.84 KB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 0 - Forks: 0
hgb-bin-proteomics/MSAnnika_CSM_Annotation
Calculates Intensities of Cross-linked Peptides from MS Annika CSMs.
Language: Python - Size: 35.2 KB - Last synced at: 3 days ago - Pushed at: 9 months ago - Stars: 1 - Forks: 0
hgb-bin-proteomics/MSAnnika_FDR
A script and functions to group and validate MS Annika results.
Language: Python - Size: 1.03 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0
hgb-bin-proteomics/MSAmanda
MS Amanda is a scoring system to identify peptides out of tandem mass spectrometry data using a database of known proteins.
Size: 91.3 MB - Last synced at: 2 days ago - Pushed at: about 2 months ago - Stars: 3 - Forks: 0
hgb-bin-proteomics/Scout_extensions
Extensions to use the cross-linking tool Scout with other software
Language: Python - Size: 10.7 KB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0
hgb-bin-proteomics/MSAnnika_MS3_Results 📦
Results and Evaluation of the MS3 Search Algorithm of MS Annika
Language: Jupyter Notebook - Size: 1.17 GB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0
hgb-bin-proteomics/MaXLinker_extensions
Extensions for better usability of the cross-linking tool MaXLinker
Language: Python - Size: 18.6 KB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0