GitHub topics: tandem-ms
BAMeScience/fiora
Meet FIORA! An in silico fragmentation algorithm designed to predict tandem mass spectra (MS/MS) with high accuracy. Using graph neural networks, FIORA models bond cleavages, fragment intensities, and estimates retention times (RT) and collision cross sections (CCS).
Language: Jupyter Notebook - Size: 126 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 30 - Forks: 6
hgb-bin-proteomics/MSAnnika
MS Annika is a crosslink search engine based on MS Amanda, aimed at identifying crosslinks of cleavable and non-cleavable crosslinkers from MS2 and MS3 spectra.
Size: 119 MB - Last synced at: 13 days ago - Pushed at: 17 days ago - Stars: 7 - Forks: 0
hgb-bin-proteomics/MSAnnika_Spectral_Library_exporter
Generate a spectral library for Spectronaut from MS Annika results.
Language: Python - Size: 7.61 MB - Last synced at: 13 days ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0
hgb-bin-proteomics/MSAnnika_exporters
Export MS Annika crosslink results to different formats.
Language: Python - Size: 160 MB - Last synced at: 13 days ago - Pushed at: 3 months ago - Stars: 4 - Forks: 0
hgb-bin-proteomics/MSAnnika_CSM_Annotation
Calculates Intensities of Cross-linked Peptides from MS Annika CSMs.
Language: Python - Size: 35.2 KB - Last synced at: 14 days ago - Pushed at: 4 months ago - Stars: 1 - Forks: 0
hgb-bin-proteomics/MSAnnika_FDR
A script and functions to group and validate MS Annika results.
Language: Python - Size: 1.03 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0
hgb-bin-proteomics/MSAmanda
MS Amanda is a scoring system to identify peptides out of tandem mass spectrometry data using a database of known proteins.
Size: 90.8 MB - Last synced at: 13 days ago - Pushed at: 7 months ago - Stars: 3 - Forks: 0
hgb-bin-proteomics/MSAnnika_Extensions
List of all available extensions for our cross-linking search engine MS Annika.
Size: 3.91 KB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0
BAMeScience/Mistle
Mistle is a fast spectral search engine. It uses a fragment-indexing technique and SIMD intrinsics to match experimental MS2 spectra to large spectral libraries at a high performance.
Language: C++ - Size: 146 MB - Last synced at: 14 days ago - Pushed at: over 1 year ago - Stars: 14 - Forks: 1
hgb-bin-proteomics/Scout_extensions
Extensions to use the cross-linking tool Scout with other software
Language: Python - Size: 10.7 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
hgb-bin-proteomics/MSAnnika_MS3_Results 📦
Results and Evaluation of the MS3 Search Algorithm of MS Annika
Language: Jupyter Notebook - Size: 1.17 GB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
hgb-bin-proteomics/MaXLinker_extensions
Extensions for better usability of the cross-linking tool MaXLinker
Language: Python - Size: 18.6 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0