GitHub topics: crosslinking
hgb-bin-proteomics/Crosslink_Utils
Helper scripts for crosslink analysis.
Language: Jupyter Notebook - Size: 74 MB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 0 - Forks: 0
hgb-bin-proteomics/MSAnnika
MS Annika is a crosslink search engine based on MS Amanda, aimed at identifying crosslinks of cleavable and non-cleavable crosslinkers from MS2 and MS3 spectra.
Size: 119 MB - Last synced at: 13 days ago - Pushed at: 16 days ago - Stars: 7 - Forks: 0
hgb-bin-proteomics/MSAnnika_Spectral_Library_exporter
Generate a spectral library for Spectronaut from MS Annika results.
Language: Python - Size: 7.61 MB - Last synced at: 12 days ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0
Rappsilber-Laboratory/xiRT
Multi-Dimensional Retention Time Prediction for Linear and Crosslinked Peptides
Language: Python - Size: 96.1 MB - Last synced at: 5 days ago - Pushed at: about 2 months ago - Stars: 8 - Forks: 2
hgb-bin-proteomics/MSAnnika_MS1_Error
Calculation of the MS1 Error for CSMs from MS Annika.
Language: Jupyter Notebook - Size: 17.9 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0
hgb-bin-proteomics/MSAnnika_exporters
Export MS Annika crosslink results to different formats.
Language: Python - Size: 160 MB - Last synced at: 12 days ago - Pushed at: 3 months ago - Stars: 4 - Forks: 0
hgb-bin-proteomics/MSAnnika_CSM_Annotation
Calculates Intensities of Cross-linked Peptides from MS Annika CSMs.
Language: Python - Size: 35.2 KB - Last synced at: 14 days ago - Pushed at: 4 months ago - Stars: 1 - Forks: 0
hgb-bin-proteomics/MSAnnika_FDR
A script and functions to group and validate MS Annika results.
Language: Python - Size: 1.03 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0
hgb-bin-proteomics/MSAnnika_NC_Results 📦
Repository containing scripts used for the analysis and visualization of the results of the MS Annika 3.0 non-cleavable crosslink search.
Language: HTML - Size: 2.02 GB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0
hgb-bin-proteomics/MSAnnika_Extensions
List of all available extensions for our cross-linking search engine MS Annika.
Size: 3.91 KB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0
michabirklbauer/apmrs2022 📦
Short Talk Presentation for APMRS 2022
Size: 3.04 MB - Last synced at: 5 days ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0
hgb-bin-proteomics/Scout_extensions
Extensions to use the cross-linking tool Scout with other software
Language: Python - Size: 10.7 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
hgb-bin-proteomics/MSAnnika_MS3_Results 📦
Results and Evaluation of the MS3 Search Algorithm of MS Annika
Language: Jupyter Notebook - Size: 1.17 GB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
hgb-bin-proteomics/MaXLinker_extensions
Extensions for better usability of the cross-linking tool MaXLinker
Language: Python - Size: 18.6 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0