hgb-bin-proteomics/Crosslink_Utils

Helper scripts for crosslink analysis.

Language: Jupyter Notebook - Size: 74 MB - Last synced at: 10 days ago - Pushed at: 10 days ago - Stars: 0 - Forks: 0

snijderlab/annotator

A simple tool to help you manually discover the depths of your (complex) spectra, one spectrum at a time.

Language: Rust - Size: 4.48 MB - Last synced at: 12 days ago - Pushed at: 12 days ago - Stars: 23 - Forks: 2

hgb-bin-proteomics/MSAnnika

MS Annika is a crosslink search engine based on MS Amanda, aimed at identifying crosslinks of cleavable and non-cleavable crosslinkers from MS2 and MS3 spectra.

Size: 119 MB - Last synced at: 14 days ago - Pushed at: 17 days ago - Stars: 7 - Forks: 0

mkdocstrings/autorefs

Automatically link across pages in MkDocs.

Language: Python - Size: 1.64 MB - Last synced at: 14 days ago - Pushed at: about 2 months ago - Stars: 65 - Forks: 10

hgb-bin-proteomics/MSAnnika_Spectral_Library_exporter

Generate a spectral library for Spectronaut from MS Annika results.

Language: Python - Size: 7.61 MB - Last synced at: 13 days ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0

achattaraj/CondensateMerger

Simulation scripts used in the study "Separation of sticker-spacer energetics governs the coalescence of metastable biomolecular condensates"

Language: Jupyter Notebook - Size: 464 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 1 - Forks: 0

integrativemodeling/Complement

Human complement modeling

Language: Python - Size: 55.8 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

integrativemodeling/nup84

Modeling of the Nup84 subcomplex of the Nuclear Pore Complex

Language: Python - Size: 666 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 1

integrativemodeling/pol_ii_g

Architecture of Pol II(G) and molecular mechanism of transcription regulation by Gdown1

Language: Python - Size: 21.8 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 2

integrativemodeling/nup82

Modeling of the Nup82 subcomplex of the Nuclear Pore Complex

Language: Python - Size: 206 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 1 - Forks: 0

integrativemodeling/mediator

Modeling of the yeast Mediator complex

Language: Python - Size: 338 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

hgb-bin-proteomics/MSAnnika_exporters

Export MS Annika crosslink results to different formats.

Language: Python - Size: 160 MB - Last synced at: 13 days ago - Pushed at: 3 months ago - Stars: 4 - Forks: 0

pFindStudio/pLink2

pLink is a software dedicated for the analysis of chemically cross-linked proteins or protein complexes using mass spectrometry.

Language: C++ - Size: 110 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 23 - Forks: 1

hgb-bin-proteomics/MSAnnika_CSM_Annotation

Calculates Intensities of Cross-linked Peptides from MS Annika CSMs.

Language: Python - Size: 35.2 KB - Last synced at: 15 days ago - Pushed at: 4 months ago - Stars: 1 - Forks: 0

hgb-bin-proteomics/MSAnnika_FDR

A script and functions to group and validate MS Annika results.

Language: Python - Size: 1.03 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0

hgb-bin-proteomics/MSAnnika_Extensions

List of all available extensions for our cross-linking search engine MS Annika.

Size: 3.91 KB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

michabirklbauer/apmrs2022 📦

Short Talk Presentation for APMRS 2022

Size: 3.04 MB - Last synced at: 6 days ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

integrativemodeling/tfiih

Modeling of the TFIIH complex using chemical cross-links and electron microscopy (EM) density maps

Language: Python - Size: 148 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

hgb-bin-proteomics/Scout_extensions

Extensions to use the cross-linking tool Scout with other software

Language: Python - Size: 10.7 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

ScheltemaLab/ChimeraX_XMAS_bundle

Language: Python - Size: 18.8 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 10 - Forks: 1

hgb-bin-proteomics/MSAnnika_MS3_Results 📦

Results and Evaluation of the MS3 Search Algorithm of MS Annika

Language: Jupyter Notebook - Size: 1.17 GB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

integrativemodeling/sea

Modeling of the SEA complex

Language: HTML - Size: 27.8 MB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 1

integrativemodeling/26S-PIPs

Modeling the structures of complexes between the 26S proteasome and proteasome interacting proteins

Language: Python - Size: 3.76 MB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

hgb-bin-proteomics/MaXLinker_extensions

Extensions for better usability of the cross-linking tool MaXLinker

Language: Python - Size: 18.6 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0

fcyu/ECL2

A fast and exhaustive cross-linked peptides identification tool.

Language: Java - Size: 361 KB - Last synced at: about 2 hours ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 0

sdiebolt/simple-xquest 📦

A bash script that simplifies the installation and setup of the xQuest/xProphet pipeline and creates a directory structure to ensure an easy use. Command-line beginner friendly.

Language: Shell - Size: 49.8 KB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0

napobear/mzt

My Z80 Tools - Credits to Piergiorgio Betti - https://www.z80cpu.eu/projects/78-data-articles/projects/76-mdz80

Language: C - Size: 184 KB - Last synced at: almost 2 years ago - Pushed at: almost 5 years ago - Stars: 0 - Forks: 0