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GitHub / cbg-ethz / scDEF

Deep exponential families for single-cell data.

JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cbg-ethz%2FscDEF

Stars: 15
Forks: 0
Open Issues: 0

License: None
Language: Python
Repo Size: 38 MB
Dependencies: 31

Created: almost 2 years ago
Updated: about 2 months ago
Last pushed: 3 months ago
Last synced: 4 days ago

Topics: batch-integration, gene-signatures, hierarchical-models, jax, matrix-factorization, scrna-seq, single-cell-rna-seq, variational-inference

Files

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Readme

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Dependencies

.github/workflows/docs.yaml actions

actions/cache v2 composite
actions/checkout v2 composite
actions/setup-python v2 composite
snok/install-poetry v1 composite

.github/workflows/test.yaml actions

actions/checkout v2 composite
actions/setup-python v2 composite
pypa/gh-action-pypi-publish master composite
snok/install-poetry v1 composite
ts-graphviz/setup-graphviz v1 composite

pyproject.toml pypi

black ^23.3.0 develop
bump2version ^1.0.1 develop
jupyter_contrib_nbextensions ^0.7.0 develop
mkdocs ^1.4.3 develop
mkdocs-jupyter ^0.24.2 develop
mkdocs-material ^9.1.18 develop
mkdocstrings ^0.22.0 develop
notebook ~6.0.0 develop
pytest ^6.2.4 develop
anndata ^0.9.2
click ^8.0.1
graphviz ^0.14.2
gseapy ^1.0.4
igraph ^0.10.4
jax >=0.4.13
jaxlib >=0.4.13
numba ~0.56.0
numpy ^1.23.4
pandas ^1.5.1
python >=3.8,<4.0
scanpy ^1.9.5
tqdm ^4.64.0