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GitHub / eonurk / cinaR
A differential and enrichment analyses pipeline for bulk ATAC-seq (and RNA-seq)
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/eonurk%2FcinaR
Stars: 11
Forks: 3
Open Issues: 1
License: None
Language: R
Repo Size: 26.2 MB
Dependencies:
29
Created: over 3 years ago
Updated: 10 days ago
Last pushed: 10 days ago
Last synced: 10 days ago
Topics: atac-seq, differential-analysis, enrichment-analysis, gene-sets
Files
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Readme
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Dependencies
DESCRIPTION
cran
- R >= 4.0.0 depends
- ChIPseeker * imports
- DESeq2 * imports
- GenomicRanges * imports
- RColorBrewer * imports
- TxDb.Hsapiens.UCSC.hg19.knownGene * imports
- TxDb.Hsapiens.UCSC.hg38.knownGene * imports
- TxDb.Mmusculus.UCSC.mm10.knownGene * imports
- dplyr * imports
- edgeR * imports
- fgsea * imports
- ggplot2 * imports
- ggrepel * imports
- grDevices * imports
- limma * imports
- pheatmap * imports
- preprocessCore * imports
- sva * imports
- utils * imports
- writexl * imports
- knitr * suggests
- markdown * suggests
- rmarkdown * suggests
- actions/checkout v2 composite
- r-lib/actions/setup-r v1 composite
.github/workflows/pkgdown.yaml
actions
- actions/cache v2 composite
- actions/checkout v2 composite
- r-lib/actions/setup-pandoc v1 composite
- r-lib/actions/setup-r v1 composite