GitHub topics: somatic
pblaney/mgp1000
Nextflow bioinformatics pipeline for large-scale analysis of Multiple Myeloma genomes
Language: Nextflow - Size: 324 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 11 - Forks: 5
nf-core/sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Language: Nextflow - Size: 102 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 442 - Forks: 443
OpenGene/gencore
Generate duplex/single consensus reads to reduce sequencing noises and remove duplications
Language: C++ - Size: 262 KB - Last synced at: 7 days ago - Pushed at: over 1 year ago - Stars: 121 - Forks: 31
sigven/pcgr
Personal Cancer Genome Reporter (PCGR)
Language: R - Size: 86.2 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 260 - Forks: 48
OpenGene/MutScan
Detect and visualize target mutations by scanning FastQ files directly
Language: C - Size: 914 KB - Last synced at: 7 days ago - Pushed at: over 3 years ago - Stars: 151 - Forks: 39
SciLifeLab/Sarek Fork of nf-core/sarek 📦
Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
Language: Nextflow - Size: 43.8 MB - Last synced at: about 2 months ago - Pushed at: over 5 years ago - Stars: 133 - Forks: 7
sylvainschmitt/treemutation
Mutation in the tropical tree canopy
Language: TeX - Size: 78.1 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0
juliawiggeshoff/VCFpytools
Assortment of VCF processing scripts
Language: Python - Size: 12.7 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
SherineAwad/SomaticMutations
This a snakemake pipeline to detect Somatic mutations (GATK4 and Mutect2)
Language: Python - Size: 34.2 KB - Last synced at: over 1 year ago - Pushed at: about 3 years ago - Stars: 3 - Forks: 1
cancerit/dockstore-cgpwgs
Dockstore implementation of CGP core WGS analysis
Language: Shell - Size: 3.74 MB - Last synced at: over 1 year ago - Pushed at: almost 5 years ago - Stars: 25 - Forks: 14
AAlhendi1707/PhylogicNDT_Docker
PhylogicNDT dockcer for clonal evolution analysis
Language: Shell - Size: 95.7 KB - Last synced at: almost 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0
ammodramus/ebsom
Empirical Bayes somatic variant calling
Language: Python - Size: 447 KB - Last synced at: about 2 years ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0
