GitHub / GiatrasKon / Chromosome11-VariantCalling-GATK
A streamlined pipeline for germline variant calling on chromosome 11 using GATK. This repository includes workflows for data preprocessing, variant discovery, and annotation, with a focus on understanding genetic variations linked to disease-associated genes.
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PURL: pkg:github/GiatrasKon/Chromosome11-VariantCalling-GATK
Stars: 0
Forks: 1
Open issues: 0
License: mit
Language: R
Size: 10.2 MB
Dependencies parsed at: Pending
Created at: 9 months ago
Updated at: 8 months ago
Pushed at: 8 months ago
Last synced at: about 1 month ago
Topics: 1000genomes, bam, bcftools, bioinformatics, bwa, exome-sequencing, gatk, gatk4-haplotypecaller, genome-analysis, haplotypecaller, human-genome, indels, population-genetics, reference-genome, samtools, snpeff, snps, variant-annotation, variant-calling, vcf