Ecosyste.ms: Repos

An open API service providing repository metadata for many open source software ecosystems.

GitHub topics: graph-transformer

wehos/awesome-graph-transformer

Papers about graph transformers.

Size: 59.6 KB - Last synced: about 8 hours ago - Pushed: about 2 months ago - Stars: 653 - Forks: 58

daiquocnguyen/Graph-Transformer

Universal Graph Transformer Self-Attention Networks (TheWebConf WWW 2022) (Pytorch and Tensorflow)

Language: Python - Size: 109 MB - Last synced: 8 days ago - Pushed: almost 2 years ago - Stars: 622 - Forks: 77

DongqiFu/VCR-Graphormer

VCR-Graphormer: A Mini-batch Graph Transformer via Virtual Connections, ICLR 2024

Language: Python - Size: 24.1 MB - Last synced: 20 days ago - Pushed: 20 days ago - Stars: 0 - Forks: 0

HUBioDataLab/DeepResponse Fork of burakcan-izmirli/DeepResponse

DeepResponse: Large Scale Prediction of Cancer Cell Line Drug Response with Deep Learning Based Pharmacogenomic Modelling

Language: Python - Size: 294 KB - Last synced: 21 days ago - Pushed: 5 months ago - Stars: 0 - Forks: 2

NSLab-CUK/Graph-Neural-Networks-Fall-2023

Welcome to the Graph Neural Networks (06838-01) class repository for the Department of Artificial Intelligence at the Catholic University of Korea. This platform is dedicated to sharing and archiving lecture materials such as practices, assignments, and sample codes for the class.

Language: Jupyter Notebook - Size: 59.2 MB - Last synced: 22 days ago - Pushed: 22 days ago - Stars: 9 - Forks: 2

shamim-hussain/tgt

Triplet Graph Transformer

Language: Python - Size: 5.62 MB - Last synced: 24 days ago - Pushed: 24 days ago - Stars: 19 - Forks: 1

HKUDS/GFormer

[SIGIR'2023] "GFormer: Graph Transformer for Recommendation"

Language: Python - Size: 7.44 MB - Last synced: about 1 month ago - Pushed: 5 months ago - Stars: 44 - Forks: 9

HySonLab/Multires-Graph-Transformer

Multiresolution Graph Transformers and Wavelet Positional Encoding for Learning Long-Range and Hierarchical Structures

Language: Python - Size: 7.22 MB - Last synced: 15 days ago - Pushed: 7 months ago - Stars: 12 - Forks: 3

willyfh/graph-transformer

An unofficial implementation of Graph Transformer (Masked Label Prediction: Unified Message Passing Model for Semi-Supervised Classification) - IJCAI 2021

Language: Python - Size: 483 KB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 22 - Forks: 4

NSLab-CUK/Community-aware-Graph-Transformer

Community-aware Graph Transformer (CGT) is a novel Graph Transformer model that utilizes community structures to address node degree biases in message-passing mechanism and developed by NS Lab @ CUK based on pure PyTorch backend.

Language: Python - Size: 179 KB - Last synced: 23 days ago - Pushed: about 1 month ago - Stars: 9 - Forks: 2

NSLab-CUK/Unified-Graph-Transformer

Unified Graph Transformer (UGT) is a novel Graph Transformer model specialised in preserving both local and global graph structures and developed by NS Lab @ CUK based on pure PyTorch backend.

Language: Python - Size: 1.64 MB - Last synced: 23 days ago - Pushed: about 1 month ago - Stars: 17 - Forks: 5

NSLab-CUK/Connector

The Graph Representation Learning Framework developed by NS Lab @ CUK.

Language: Python - Size: 35.8 MB - Last synced: 23 days ago - Pushed: 9 months ago - Stars: 7 - Forks: 1

LARS-research/3D-PGT

KDD-23 Automated 3D Pre-Training for Molecular Property Prediction

Language: Python - Size: 1.57 MB - Last synced: 23 days ago - Pushed: 11 months ago - Stars: 5 - Forks: 2

vijaydwivedi75/gnn-lspe

Source code for GNN-LSPE (Graph Neural Networks with Learnable Structural and Positional Representations), ICLR 2022

Language: Python - Size: 267 KB - Last synced: about 1 month ago - Pushed: over 2 years ago - Stars: 221 - Forks: 32

azminewasi/Awesome-Graph-Research-ICLR2024

It is a comprehensive resource hub compiling all graph papers accepted at the International Conference on Learning Representations (ICLR) in 2024.

Size: 1.93 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 31 - Forks: 1

cornell-zhang/HOGA

Hop-Wise Graph Attention for Scalable and Generalizable Learning on Circuits

Language: Python - Size: 488 KB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 17 - Forks: 0

meakbiyik/graphtester

Test graph isomorphism with 1-WL for different graph classes and labelings

Language: Python - Size: 704 KB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 3 - Forks: 0

LMissher/STWave

[ICDE'2023] When Spatio-Temporal Meet Wavelets: Disentangled Traffic Forecasting via Efficient Spectral Graph Attention Networks

Language: Python - Size: 130 KB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 52 - Forks: 4

qitianwu/NodeFormer

The official implementation of NeurIPS22 spotlight paper "NodeFormer: A Scalable Graph Structure Learning Transformer for Node Classification"

Language: Jupyter Notebook - Size: 353 KB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 255 - Forks: 25

jw9730/lps

[NeurIPS'23 Spotlight] Learning Probabilistic Symmetrization for Architecture Agnostic Equivariance (LPS), in PyTorch

Language: Python - Size: 149 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 24 - Forks: 2

MANDO-Project/ge-sc-transformer

MANDO-HGT is a framework for detecting smart contract vulnerabilities. Given either in source code or bytecode forms, MANDO-HGT adapts heterogeneous graph transformers with customized meta relations for graph nodes and edges to learn their embeddings and train classifiers for detecting various vulnerability types in the contracts' nodes and graphs.

Language: Solidity - Size: 1.93 GB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 10 - Forks: 5

burakcan-izmirli/DeepResponse

DeepResponse: Large Scale Prediction of Cancer Cell Line Drug Response with Deep Learning Based Pharmacogenomic Modelling

Language: Python - Size: 330 KB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 3 - Forks: 3

qitianwu/DIFFormer

The official implementation for ICLR23 spotlight paper "DIFFormer: Scalable (Graph) Transformers Induced by Energy Constrained Diffusion"

Language: Python - Size: 80.1 KB - Last synced: 3 months ago - Pushed: 11 months ago - Stars: 264 - Forks: 29

BorgwardtLab/PST

Protein Structure Transformer (PST): Endowing pretrained protein language models with structural knowledge

Language: Python - Size: 2.27 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 7 - Forks: 0

rampasek/GraphGPS

Recipe for a General, Powerful, Scalable Graph Transformer

Language: Python - Size: 12.6 MB - Last synced: 5 months ago - Pushed: 5 months ago - Stars: 513 - Forks: 93

felipelmc/Deep-Learning

Assignments and presentation developed in the scope of the Deep Learning discipline, lectured by Professor Dário Oliveira (FGV EMAp). Presentation was co-authored with @anacarolerthal

Language: Jupyter Notebook - Size: 17.8 MB - Last synced: 4 months ago - Pushed: 6 months ago - Stars: 0 - Forks: 0

vijaydwivedi75/lrgb

Long Range Graph Benchmark, NeurIPS 2022 Track on D&B

Language: Jupyter Notebook - Size: 27.6 MB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 120 - Forks: 14

graphdeeplearning/graphtransformer

Graph Transformer Architecture. Source code for "A Generalization of Transformer Networks to Graphs", DLG-AAAI'21.

Language: Python - Size: 170 KB - Last synced: 7 months ago - Pushed: almost 3 years ago - Stars: 737 - Forks: 122

BorgwardtLab/SAT

Official Pytorch code for Structure-Aware Transformer.

Language: Python - Size: 2.59 MB - Last synced: 7 months ago - Pushed: over 1 year ago - Stars: 183 - Forks: 30

lsj2408/Transformer-M

[ICLR 2023] One Transformer Can Understand Both 2D & 3D Molecular Data (official implementation)

Language: Python - Size: 5.45 MB - Last synced: 7 months ago - Pushed: about 1 year ago - Stars: 155 - Forks: 21

minjiyoon/CGT

Scalable and privacy-enhanced graph generative models for benchmark graph neural networks

Language: Python - Size: 368 KB - Last synced: 7 months ago - Pushed: 7 months ago - Stars: 13 - Forks: 1

sail-sg/VGT

Video Graph Transformer for Video Question Answering (ECCV'22)

Language: Python - Size: 454 KB - Last synced: 6 months ago - Pushed: 12 months ago - Stars: 38 - Forks: 9

jcyk/gtos

Code for AAAI2020 paper "Graph Transformer for Graph-to-Sequence Learning"

Language: Python - Size: 721 KB - Last synced: 7 months ago - Pushed: about 4 years ago - Stars: 183 - Forks: 26

XuhanLiu/DrugEx

Deep learning toolkit for Drug Design with Pareto-based Multi-Objective optimization in Polypharmacology

Language: Python - Size: 88.2 MB - Last synced: 7 months ago - Pushed: 11 months ago - Stars: 177 - Forks: 64

JinheonBaek/GMT

Official Code Repository for the paper "Accurate Learning of Graph Representations with Graph Multiset Pooling" (ICLR 2021)

Language: Python - Size: 34.1 MB - Last synced: 7 months ago - Pushed: over 2 years ago - Stars: 79 - Forks: 19

ansonb/FeTA_TMLR

This repository reproduces the results in the paper "How expressive are transformers in spectral domain for graphs?"(published in TMLR)

Language: Python - Size: 938 KB - Last synced: 9 months ago - Pushed: almost 2 years ago - Stars: 9 - Forks: 0

alexanderkrauck/pretraining-graph-transformers

Pretraining Techniques for Graph Transformers

Language: Jupyter Notebook - Size: 46.8 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 0

cptq/SignNet-BasisNet

SignNet and BasisNet

Language: Python - Size: 2.55 MB - Last synced: 9 months ago - Pushed: 10 months ago - Stars: 72 - Forks: 13

qslim/PDF

Towards Better Graph Representation Learning with Parameterized Decomposition & Filtering

Language: Python - Size: 56.6 KB - Last synced: 10 months ago - Pushed: 10 months ago - Stars: 8 - Forks: 1

BUAABIGSCity/PDFormer

[AAAI2023] A PyTorch implementation of PDFormer: Propagation Delay-aware Dynamic Long-range Transformer for Traffic Flow Prediction.

Language: Python - Size: 8.33 MB - Last synced: 11 months ago - Pushed: 11 months ago - Stars: 74 - Forks: 16

sorrowyn/MGTN

2021 AAAI Modular Graph Transformer Networks for Multi-Label Image Classification; Official GitHub: https://github.com/ReML-AI/MGTN

Language: Python - Size: 2.14 MB - Last synced: 7 months ago - Pushed: over 2 years ago - Stars: 18 - Forks: 1

GRAPH-0/RGTN-NIE

Implementation for the paper: Representation Learning on Knowledge Graphs for Node Importance Estimation

Language: Python - Size: 12.6 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 25 - Forks: 10

luis-mueller/probing-graph-transformers Fork of rampasek/GraphGPS

Code for our paper "Attending to Graph Transformers"

Language: Python - Size: 12.6 MB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 28 - Forks: 1

luis-mueller/bottleneck Fork of tech-srl/bottleneck

Code for our paper "Attending to Graph Transformers"

Language: Python - Size: 859 KB - Last synced: over 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

ayushnoori/graph-bbb

Graph Molecular Learning to Predict BBB Penetration

Language: Jupyter Notebook - Size: 17.2 MB - Last synced: about 1 year ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

Related Keywords
graph-transformer 45 graph-neural-networks 25 graph-representation-learning 13 transformer 12 deep-learning 9 graph 7 machine-learning 6 pytorch 6 graph-neural-network 6 gnn 5 transformers 5 graph-deep-learning 4 graph-algorithms 3 node-classification 3 text-classification 3 attention 3 graph-convolutional-networks 2 image-classification 2 molecular-property-prediction 2 pretraining 2 graphs 2 large-graph 2 geometric-deep-learning 2 long-range-dependence 2 deep-neural-networks 2 transformer-networks 2 wavelet-transform 2 positional-encoding 2 graph-classification 2 graph-machine-learning 2 over-squashing 2 self-attention 2 transformer-models 2 cancer-research 2 convolutional-neural-networks 2 drug-response-prediction 2 multi-omics 2 graph-learning 2 aaai 2 pytorch-geometric 2 molecular-modeling 1 molecule 1 long-range 1 general-purpose-molecular-model 1 icml-2022 1 graph-generative-models 1 graph-datasets 1 graph-benchmark 1 transfer-learning 1 xgboost 1 semantic-segmentation 1 generative-adversarial-network 1 autoencoders 1 action-recognition 1 protein-structure 1 protein-representation-learning 1 evolutionary-scale-modeling 1 spatial-temporal-forecasting 1 pytorch-geometric-temporal 1 iclr2023 1 diffusion-equation 1 diffusion 1 vulnerability-detection 1 blood-brain-barrier 1 dgl-graph 1 multi-label-image 1 traffic-prediction 1 traffic-flow-prediction 1 spatio-temporal-prediction 1 multivariate-time-series-prediction 1 kshape 1 dtw 1 aaai2023 1 tansformer 1 graph-data 1 spectral-graph-theory 1 graph-representation 1 graph-reconstruction 1 graph-pooling 1 graph-multiset-transformer 1 graph-multiset-pooling 1 reinforcement-learning 1 multi-objective-optimization 1 cheminformatics 1 machine-translation 1 amr 1 videoqa 1 video-question-answering 1 video-language-understanding 1 temporal-dynamics 1 iclr2024 1 iclr 1 grap-clustering 1 equivariant-network 1 awesome-lists 1 awesome-list 1 awesome 1 artificial-intelligence 1 representation-learning 1 molecules 1