Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub topics: graph-transformer
wehos/awesome-graph-transformer
Papers about graph transformers.
Size: 59.6 KB - Last synced: about 8 hours ago - Pushed: about 2 months ago - Stars: 653 - Forks: 58
daiquocnguyen/Graph-Transformer
Universal Graph Transformer Self-Attention Networks (TheWebConf WWW 2022) (Pytorch and Tensorflow)
Language: Python - Size: 109 MB - Last synced: 8 days ago - Pushed: almost 2 years ago - Stars: 622 - Forks: 77
DongqiFu/VCR-Graphormer
VCR-Graphormer: A Mini-batch Graph Transformer via Virtual Connections, ICLR 2024
Language: Python - Size: 24.1 MB - Last synced: 20 days ago - Pushed: 20 days ago - Stars: 0 - Forks: 0
HUBioDataLab/DeepResponse Fork of burakcan-izmirli/DeepResponse
DeepResponse: Large Scale Prediction of Cancer Cell Line Drug Response with Deep Learning Based Pharmacogenomic Modelling
Language: Python - Size: 294 KB - Last synced: 21 days ago - Pushed: 5 months ago - Stars: 0 - Forks: 2
NSLab-CUK/Graph-Neural-Networks-Fall-2023
Welcome to the Graph Neural Networks (06838-01) class repository for the Department of Artificial Intelligence at the Catholic University of Korea. This platform is dedicated to sharing and archiving lecture materials such as practices, assignments, and sample codes for the class.
Language: Jupyter Notebook - Size: 59.2 MB - Last synced: 22 days ago - Pushed: 22 days ago - Stars: 9 - Forks: 2
shamim-hussain/tgt
Triplet Graph Transformer
Language: Python - Size: 5.62 MB - Last synced: 24 days ago - Pushed: 24 days ago - Stars: 19 - Forks: 1
HKUDS/GFormer
[SIGIR'2023] "GFormer: Graph Transformer for Recommendation"
Language: Python - Size: 7.44 MB - Last synced: about 1 month ago - Pushed: 5 months ago - Stars: 44 - Forks: 9
HySonLab/Multires-Graph-Transformer
Multiresolution Graph Transformers and Wavelet Positional Encoding for Learning Long-Range and Hierarchical Structures
Language: Python - Size: 7.22 MB - Last synced: 15 days ago - Pushed: 7 months ago - Stars: 12 - Forks: 3
willyfh/graph-transformer
An unofficial implementation of Graph Transformer (Masked Label Prediction: Unified Message Passing Model for Semi-Supervised Classification) - IJCAI 2021
Language: Python - Size: 483 KB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 22 - Forks: 4
NSLab-CUK/Community-aware-Graph-Transformer
Community-aware Graph Transformer (CGT) is a novel Graph Transformer model that utilizes community structures to address node degree biases in message-passing mechanism and developed by NS Lab @ CUK based on pure PyTorch backend.
Language: Python - Size: 179 KB - Last synced: 23 days ago - Pushed: about 1 month ago - Stars: 9 - Forks: 2
NSLab-CUK/Unified-Graph-Transformer
Unified Graph Transformer (UGT) is a novel Graph Transformer model specialised in preserving both local and global graph structures and developed by NS Lab @ CUK based on pure PyTorch backend.
Language: Python - Size: 1.64 MB - Last synced: 23 days ago - Pushed: about 1 month ago - Stars: 17 - Forks: 5
NSLab-CUK/Connector
The Graph Representation Learning Framework developed by NS Lab @ CUK.
Language: Python - Size: 35.8 MB - Last synced: 23 days ago - Pushed: 9 months ago - Stars: 7 - Forks: 1
LARS-research/3D-PGT
KDD-23 Automated 3D Pre-Training for Molecular Property Prediction
Language: Python - Size: 1.57 MB - Last synced: 23 days ago - Pushed: 11 months ago - Stars: 5 - Forks: 2
vijaydwivedi75/gnn-lspe
Source code for GNN-LSPE (Graph Neural Networks with Learnable Structural and Positional Representations), ICLR 2022
Language: Python - Size: 267 KB - Last synced: about 1 month ago - Pushed: over 2 years ago - Stars: 221 - Forks: 32
azminewasi/Awesome-Graph-Research-ICLR2024
It is a comprehensive resource hub compiling all graph papers accepted at the International Conference on Learning Representations (ICLR) in 2024.
Size: 1.93 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 31 - Forks: 1
cornell-zhang/HOGA
Hop-Wise Graph Attention for Scalable and Generalizable Learning on Circuits
Language: Python - Size: 488 KB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 17 - Forks: 0
meakbiyik/graphtester
Test graph isomorphism with 1-WL for different graph classes and labelings
Language: Python - Size: 704 KB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 3 - Forks: 0
LMissher/STWave
[ICDE'2023] When Spatio-Temporal Meet Wavelets: Disentangled Traffic Forecasting via Efficient Spectral Graph Attention Networks
Language: Python - Size: 130 KB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 52 - Forks: 4
qitianwu/NodeFormer
The official implementation of NeurIPS22 spotlight paper "NodeFormer: A Scalable Graph Structure Learning Transformer for Node Classification"
Language: Jupyter Notebook - Size: 353 KB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 255 - Forks: 25
jw9730/lps
[NeurIPS'23 Spotlight] Learning Probabilistic Symmetrization for Architecture Agnostic Equivariance (LPS), in PyTorch
Language: Python - Size: 149 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 24 - Forks: 2
MANDO-Project/ge-sc-transformer
MANDO-HGT is a framework for detecting smart contract vulnerabilities. Given either in source code or bytecode forms, MANDO-HGT adapts heterogeneous graph transformers with customized meta relations for graph nodes and edges to learn their embeddings and train classifiers for detecting various vulnerability types in the contracts' nodes and graphs.
Language: Solidity - Size: 1.93 GB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 10 - Forks: 5
burakcan-izmirli/DeepResponse
DeepResponse: Large Scale Prediction of Cancer Cell Line Drug Response with Deep Learning Based Pharmacogenomic Modelling
Language: Python - Size: 330 KB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 3 - Forks: 3
qitianwu/DIFFormer
The official implementation for ICLR23 spotlight paper "DIFFormer: Scalable (Graph) Transformers Induced by Energy Constrained Diffusion"
Language: Python - Size: 80.1 KB - Last synced: 3 months ago - Pushed: 11 months ago - Stars: 264 - Forks: 29
BorgwardtLab/PST
Protein Structure Transformer (PST): Endowing pretrained protein language models with structural knowledge
Language: Python - Size: 2.27 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 7 - Forks: 0
rampasek/GraphGPS
Recipe for a General, Powerful, Scalable Graph Transformer
Language: Python - Size: 12.6 MB - Last synced: 5 months ago - Pushed: 5 months ago - Stars: 513 - Forks: 93
felipelmc/Deep-Learning
Assignments and presentation developed in the scope of the Deep Learning discipline, lectured by Professor Dário Oliveira (FGV EMAp). Presentation was co-authored with @anacarolerthal
Language: Jupyter Notebook - Size: 17.8 MB - Last synced: 4 months ago - Pushed: 6 months ago - Stars: 0 - Forks: 0
vijaydwivedi75/lrgb
Long Range Graph Benchmark, NeurIPS 2022 Track on D&B
Language: Jupyter Notebook - Size: 27.6 MB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 120 - Forks: 14
graphdeeplearning/graphtransformer
Graph Transformer Architecture. Source code for "A Generalization of Transformer Networks to Graphs", DLG-AAAI'21.
Language: Python - Size: 170 KB - Last synced: 7 months ago - Pushed: almost 3 years ago - Stars: 737 - Forks: 122
BorgwardtLab/SAT
Official Pytorch code for Structure-Aware Transformer.
Language: Python - Size: 2.59 MB - Last synced: 7 months ago - Pushed: over 1 year ago - Stars: 183 - Forks: 30
lsj2408/Transformer-M
[ICLR 2023] One Transformer Can Understand Both 2D & 3D Molecular Data (official implementation)
Language: Python - Size: 5.45 MB - Last synced: 7 months ago - Pushed: about 1 year ago - Stars: 155 - Forks: 21
minjiyoon/CGT
Scalable and privacy-enhanced graph generative models for benchmark graph neural networks
Language: Python - Size: 368 KB - Last synced: 7 months ago - Pushed: 7 months ago - Stars: 13 - Forks: 1
sail-sg/VGT
Video Graph Transformer for Video Question Answering (ECCV'22)
Language: Python - Size: 454 KB - Last synced: 6 months ago - Pushed: 12 months ago - Stars: 38 - Forks: 9
jcyk/gtos
Code for AAAI2020 paper "Graph Transformer for Graph-to-Sequence Learning"
Language: Python - Size: 721 KB - Last synced: 7 months ago - Pushed: about 4 years ago - Stars: 183 - Forks: 26
XuhanLiu/DrugEx
Deep learning toolkit for Drug Design with Pareto-based Multi-Objective optimization in Polypharmacology
Language: Python - Size: 88.2 MB - Last synced: 7 months ago - Pushed: 11 months ago - Stars: 177 - Forks: 64
JinheonBaek/GMT
Official Code Repository for the paper "Accurate Learning of Graph Representations with Graph Multiset Pooling" (ICLR 2021)
Language: Python - Size: 34.1 MB - Last synced: 7 months ago - Pushed: over 2 years ago - Stars: 79 - Forks: 19
ansonb/FeTA_TMLR
This repository reproduces the results in the paper "How expressive are transformers in spectral domain for graphs?"(published in TMLR)
Language: Python - Size: 938 KB - Last synced: 9 months ago - Pushed: almost 2 years ago - Stars: 9 - Forks: 0
alexanderkrauck/pretraining-graph-transformers
Pretraining Techniques for Graph Transformers
Language: Jupyter Notebook - Size: 46.8 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 0
cptq/SignNet-BasisNet
SignNet and BasisNet
Language: Python - Size: 2.55 MB - Last synced: 9 months ago - Pushed: 10 months ago - Stars: 72 - Forks: 13
qslim/PDF
Towards Better Graph Representation Learning with Parameterized Decomposition & Filtering
Language: Python - Size: 56.6 KB - Last synced: 10 months ago - Pushed: 10 months ago - Stars: 8 - Forks: 1
BUAABIGSCity/PDFormer
[AAAI2023] A PyTorch implementation of PDFormer: Propagation Delay-aware Dynamic Long-range Transformer for Traffic Flow Prediction.
Language: Python - Size: 8.33 MB - Last synced: 11 months ago - Pushed: 11 months ago - Stars: 74 - Forks: 16
sorrowyn/MGTN
2021 AAAI Modular Graph Transformer Networks for Multi-Label Image Classification; Official GitHub: https://github.com/ReML-AI/MGTN
Language: Python - Size: 2.14 MB - Last synced: 7 months ago - Pushed: over 2 years ago - Stars: 18 - Forks: 1
GRAPH-0/RGTN-NIE
Implementation for the paper: Representation Learning on Knowledge Graphs for Node Importance Estimation
Language: Python - Size: 12.6 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 25 - Forks: 10
luis-mueller/probing-graph-transformers Fork of rampasek/GraphGPS
Code for our paper "Attending to Graph Transformers"
Language: Python - Size: 12.6 MB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 28 - Forks: 1
luis-mueller/bottleneck Fork of tech-srl/bottleneck
Code for our paper "Attending to Graph Transformers"
Language: Python - Size: 859 KB - Last synced: over 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0
ayushnoori/graph-bbb
Graph Molecular Learning to Predict BBB Penetration
Language: Jupyter Notebook - Size: 17.2 MB - Last synced: about 1 year ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0