Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub / BioinformaticsFMRP / TCGAWorkflow
TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioinformaticsFMRP%2FTCGAWorkflow
Stars: 38
Forks: 20
Open Issues: 10
License: None
Language: TeX
Repo Size: 36.9 MB
Dependencies:
33
Created: about 8 years ago
Updated: 11 months ago
Last pushed: 12 months ago
Last synced: 8 months ago
Topics: bioconductor, tcga, tcgabiolinks
Files
Loading...
Readme
Loading...
Dependencies
DESCRIPTION
cran
- R >= 3.4.0 depends
- AnnotationHub * imports
- BSgenome.Hsapiens.UCSC.hg19 * imports
- ChIPseeker * imports
- ComplexHeatmap * imports
- DT * imports
- ELMER * imports
- GenomeInfoDb * imports
- GenomicRanges * imports
- RTCGAToolbox * imports
- SummarizedExperiment * imports
- TCGAWorkflowData >= 1.9.0 imports
- TCGAbiolinks * imports
- biomaRt * imports
- c3net * imports
- circlize * imports
- clusterProfiler * imports
- downloader >= 0.4 imports
- ggplot2 * imports
- ggpubr * imports
- ggthemes * imports
- graphics * imports
- gt * imports
- knitr * imports
- maftools * imports
- minet * imports
- motifStack * imports
- pander * imports
- parallel * imports
- pathview * imports
- pbapply * imports
- rGADEM * imports
- rmarkdown * imports