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GitHub / greenelab / pancancer
Building classifiers using cancer transcriptomes across 33 different cancer-types
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/greenelab%2Fpancancer
Stars: 115
Forks: 59
Open Issues: 8
License: bsd-3-clause
Language: Jupyter Notebook
Repo Size: 28.8 MB
Dependencies:
24
Created: over 7 years ago
Updated: 8 months ago
Last pushed: about 5 years ago
Last synced: 7 months ago
Topics: analysis, cancer, classifier, gene-expression, machine-learning, methodology, pancancer, tcga, tool, transcriptome
Files
Dependencies
- biopython 1.70.*
- dask-searchcv 0.2.0.*
- ipykernel 4.8.1.*
- jupyter 1.0.0.*
- nb_conda_kernels 2.1.0.*
- numexpr 2.6.5.*
- numpy 1.14.3.*
- pandas 0.23.0.*
- plotnine 0.3.0.*
- python 3.6.5.*
- r-cowplot 0.9.3.*
- r-dplyr 0.7.6.*
- r-ggplot2 3.0.0.*
- r-ggpmisc 0.3.0.*
- r-ggrepel 0.8.0.*
- r-hmisc 4.0_3.*
- r-irkernel 0.8.11.*
- r-optparse 1.4.4.*
- r-pheatmap 1.0.10.*
- r-readr 1.1.1.*
- scikit-learn 0.19.1.*
- seaborn 0.8.1.*
- statsmodels 0.9.0.*
- widgetsnbextension 2.0.0.*