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GitHub / JetBrains-Research / bioinf-commons
Bioinformatics library in Kotlin
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JetBrains-Research%2Fbioinf-commons
Stars: 31
Forks: 3
Open Issues: 1
License: mit
Language: Kotlin
Repo Size: 2.4 MB
Dependencies:
22
Created: over 5 years ago
Updated: 20 days ago
Last pushed: 20 days ago
Last synced: 20 days ago
Topics: 2bit, bam, bed, bioinformatics, cancellable, chip-seq, dataframe, dataset, dna-sequence, fasta, fastq, hmm, hypothesis-testing, kotlin, methylation, mixture, progress, sampling
Files
Dependencies
- ch.qos.logback:logback-classic 1.4.3 compile
- ch.qos.logback:logback-core 1.4.3 compile
- com.carrotsearch:jsuffixarrays 0.1.0 compile
- com.fasterxml.jackson.core:jackson-databind 2.8.11 compile
- com.fasterxml.jackson.dataformat:jackson-dataformat-yaml 2.8.11 compile
- com.github.broadinstitute:picard 2.18.26 compile
- com.github.samtools:htsjdk 2.10.1 compile
- com.google.code.gson:gson 2.7 compile
- com.google.guava:guava 23.6.1-jre compile
- commons-net:commons-net 3.5 compile
- net.sf.jopt-simple:jopt-simple 5.0.4 compile
- org.apache.commons:commons-csv 1.4 compile
- org.apache.httpcomponents:httpclient 4.5.6 compile
- org.jetbrains.bio:big 0.9.1 compile
- org.jetbrains.bio:viktor 1.0.0 compile
- org.jetbrains.kotlin:kotlin-reflect $kotlin_version compile
- org.jetbrains.kotlin:kotlin-stdlib $kotlin_version compile
- org.jetbrains.kotlinx:kotlinx-support-jdk8 0.1 compile
- org.jgrapht:jgrapht-core 0.9.2 compile
- org.jline:jline-terminal 3.10.0 compile
- junit:junit 4.13.2 testCompile
- org.jetbrains.kotlin:kotlin-test $kotlin_version testCompile