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GitHub / telatin / bamtocov
🏔 coverage extraction from BAM/CRAM files, supporting targets 📊
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/telatin%2Fbamtocov
Stars: 45
Forks: 4
Open Issues: 4
License: mit
Language: Nim
Repo Size: 33.1 MB
Dependencies:
99
Created: over 3 years ago
Updated: over 1 year ago
Last pushed: over 1 year ago
Last synced: about 1 year ago
Topics: alignment, bam, bed, bioinformatics, coverage, gff, ngs
Files
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Readme
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Dependencies
.github/workflows/build.yml
actions
- actions/cache v1 composite
- actions/checkout v2 composite
- iffy/install-nim v3.2.0 composite
- actions/checkout v2 composite
benchmark/Dockerfile
docker
- nfcore/base 1.9 build
docs/Gemfile
rubygems
- faraday < 1 development
- github-pages >= 0 development
- jekyll-commonmark-ghpages >= 0 development
- jekyll-remote-theme >= 0 development
- liquid >= 4.0.1 development
docs/Gemfile.lock
rubygems
- activesupport 6.0.3.2
- addressable 2.7.0
- coffee-script 2.4.1
- coffee-script-source 1.11.1
- colorator 1.1.0
- commonmarker 0.17.13
- concurrent-ruby 1.1.7
- dnsruby 1.61.4
- em-websocket 0.5.1
- ethon 0.12.0
- eventmachine 1.2.7
- execjs 2.7.0
- faraday 0.17.3
- ffi 1.13.1
- forwardable-extended 2.6.0
- gemoji 3.0.1
- github-pages 207
- github-pages-health-check 1.16.1
- html-pipeline 2.14.0
- http_parser.rb 0.6.0
- i18n 0.9.5
- jekyll 3.9.0
- jekyll-avatar 0.7.0
- jekyll-coffeescript 1.1.1
- jekyll-commonmark 1.3.1
- jekyll-commonmark-ghpages 0.1.6
- jekyll-default-layout 0.1.4
- jekyll-feed 0.13.0
- jekyll-gist 1.5.0
- jekyll-github-metadata 2.13.0
- jekyll-mentions 1.5.1
- jekyll-optional-front-matter 0.3.2
- jekyll-paginate 1.1.0
- jekyll-readme-index 0.3.0
- jekyll-redirect-from 0.15.0
- jekyll-relative-links 0.6.1
- jekyll-remote-theme 0.4.1
- jekyll-sass-converter 1.5.2
- jekyll-seo-tag 2.6.1
- jekyll-sitemap 1.4.0
- jekyll-swiss 1.0.0
- jekyll-theme-architect 0.1.1
- jekyll-theme-cayman 0.1.1
- jekyll-theme-dinky 0.1.1
- jekyll-theme-hacker 0.1.1
- jekyll-theme-leap-day 0.1.1
- jekyll-theme-merlot 0.1.1
- jekyll-theme-midnight 0.1.1
- jekyll-theme-minimal 0.1.1
- jekyll-theme-modernist 0.1.1
- jekyll-theme-primer 0.5.4
- jekyll-theme-slate 0.1.1
- jekyll-theme-tactile 0.1.1
- jekyll-theme-time-machine 0.1.1
- jekyll-titles-from-headings 0.5.3
- jekyll-watch 2.2.1
- jemoji 0.11.1
- kramdown 2.3.0
- kramdown-parser-gfm 1.1.0
- liquid 4.0.3
- listen 3.2.1
- mercenary 0.3.6
- mini_portile2 2.4.0
- minima 2.5.1
- minitest 5.14.2
- multipart-post 2.1.1
- nokogiri 1.10.10
- octokit 4.18.0
- pathutil 0.16.2
- public_suffix 3.1.1
- rb-fsevent 0.10.4
- rb-inotify 0.10.1
- rexml 3.2.4
- rouge 3.19.0
- ruby-enum 0.8.0
- rubyzip 2.3.0
- safe_yaml 1.0.5
- sass 3.7.4
- sass-listen 4.0.0
- sawyer 0.8.2
- simpleidn 0.1.1
- terminal-table 1.8.0
- thread_safe 0.3.6
- typhoeus 1.4.0
- tzinfo 1.2.7
- unf 0.1.4
- unf_ext 0.0.7.7
- unicode-display_width 1.7.0
- zeitwerk 2.4.0