Ecosyste.ms: Repos

An open API service providing repository metadata for many open source software ecosystems.

GitHub topics: bedtools

Repositories

sebastian-gregoricchio/Rseb

An R-package for daily tasks required to handle biological data as well as avoid re-coding of small functions for quick but necessary data management.

Language: R - Size: 12.9 MB - Last synced: 1 day ago - Pushed: 1 day ago - Stars: 0 - Forks: 1

rpianezza/GenomeDelta

Library-free horizontal transfer detection, with a focus on transposable element invasions

Language: Shell - Size: 54.5 MB - Last synced: 4 days ago - Pushed: 4 days ago - Stars: 6 - Forks: 0

metamaden/seq_answers

Sequencing data preprocessing

Language: R - Size: 1.44 MB - Last synced: 14 days ago - Pushed: almost 6 years ago - Stars: 0 - Forks: 0

biowasm/biowasm

WebAssembly modules for genomics

Language: C - Size: 5.11 MB - Last synced: 14 days ago - Pushed: 15 days ago - Stars: 190 - Forks: 18

rnabioco/valr

Genome Interval Arithmetic in R

Language: R - Size: 67.5 MB - Last synced: 19 days ago - Pushed: 19 days ago - Stars: 86 - Forks: 24

asntech/intervene

Intervene: a tool for intersection and visualization of multiple genomic region and gene sets

Language: Python - Size: 20.3 MB - Last synced: 17 days ago - Pushed: 7 months ago - Stars: 129 - Forks: 28

noamteyssier/gia

gia: Genomic Interval Arithmetic

Language: Rust - Size: 3.12 MB - Last synced: 28 days ago - Pushed: 29 days ago - Stars: 45 - Forks: 2

DEIB-GECO/PyGMQL

Python Library for data analysis based on GMQL

Language: Python - Size: 43.4 MB - Last synced: about 1 month ago - Pushed: over 2 years ago - Stars: 11 - Forks: 5

ataki/epigensML Fork of nishithbsk/Epigens

Predicting Tissue Specific Enhancer Activity from Epigenetic Marks and Sequence

Language: Python - Size: 90.4 MB - Last synced: about 2 months ago - Pushed: over 9 years ago - Stars: 0 - Forks: 0

jazminvaleriano/RNAseq-differential-expression

Assembly of RNA transcriptome, differential expression analysis, identification of lncRNA candidates based on genomic context and protein coding potential.

Language: Shell - Size: 272 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 0

ProfH2SO4/lumbridge

Plant DNA Annotation and Preparation for Neural Networks

Language: Python - Size: 4.4 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 0 - Forks: 0

LBGC-CFB/SpliceLauncher

RNAseq pipeline for alternative splicing junctions

Language: R - Size: 35 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 9 - Forks: 8

asadprodhan/Gene_seq_extraction_from_multiple_genomes

How do I automate extracting multiple gene sequences from multiple genomes?

Language: Shell - Size: 124 KB - Last synced: 7 months ago - Pushed: 7 months ago - Stars: 0 - Forks: 0

jlanga/exfi

Get exons from a transcriptome and raw genomic reads using abyss-bloom and bedtools

Language: Python - Size: 1.34 MB - Last synced: 8 months ago - Pushed: almost 4 years ago - Stars: 3 - Forks: 1

davetang/defining_genomic_regions

Define regions in the genome

Language: Perl - Size: 5.45 MB - Last synced: 8 months ago - Pushed: over 2 years ago - Stars: 21 - Forks: 10

asadprodhan/A-beginner-s-guide-to-Bioinformatics

A beginner’s guide to Bioinformatics

Size: 337 KB - Last synced: 6 months ago - Pushed: over 1 year ago - Stars: 3 - Forks: 0

Seave is a web platform that enables genetic variants to be easily filtered and annotated with in silico pathogenicity prediction scores and annotations from popular disease databases. Seave stores genomic variation of all types and sizes, and allows filtering for specific inheritance patterns, quality values, allele frequencies and gene lists. Seave is open source and deployable locally, or on a cloud computing provider, and works readily with gene panel, exome and whole genome data, scaling from single labs to multi-institution scale.

Language: HTML - Size: 21 MB - Last synced: about 2 months ago - Pushed: almost 6 years ago - Stars: 15 - Forks: 3