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GitHub / sanger-pathogens / ariba
Antimicrobial Resistance Identification By Assembly
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sanger-pathogens%2Fariba
Stars: 155
Forks: 52
Open Issues: 42
License: other
Language: Python
Repo Size: 12 MB
Dependencies:
7
Created: over 9 years ago
Updated: 21 days ago
Last pushed: 8 months ago
Last synced: 5 days ago
Commit Stats
Commits: 1577
Authors: 21
Mean commits per author: 75.1
Development Distribution Score: 0.488
More commit stats: https://commits.ecosyste.ms/hosts/GitHub/repositories/sanger-pathogens/ariba
Topics: bioinformatics, bioinformatics-pipeline, genomics, global-health, infectious-diseases, next-generation-sequencing, pathogen, research, sequencing
Files
Dependencies
- BeautifulSoup4 *
- biopython *
- dendropy *
- matplotlib *
- pyfastaq *
- pymummer <=0.10.3
- pysam *