Public-Health-Bioinformatics/irida-plugin-mlst

Determine the MLST sequence type for samples using PubMLST schemes in the IRIDA system

Language: Java - Size: 485 KB - Last synced at: about 1 year ago - Pushed at: almost 6 years ago - Stars: 0 - Forks: 2

Public-Health-Bioinformatics/irida-plugin-micall-lite

Human RNA virus genotyping

Language: Java - Size: 455 KB - Last synced at: about 1 year ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 0

Public-Health-Bioinformatics/irida-plugin-tbprofiler

Language: Java - Size: 410 KB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 1

Public-Health-Bioinformatics/irida-plugin-tetyper

Determine the sequence type of specific transposable elements in bacterial isolates.

Language: Java - Size: 343 KB - Last synced at: about 1 year ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

Public-Health-Bioinformatics/irida-plugin-snippy-phylogenomics

Call core SNPs agains a reference genome for a set of bacterial isolates, and build a phylogenetic tree based on the core-genome SNP information.

Language: Java - Size: 754 KB - Last synced at: about 1 year ago - Pushed at: over 4 years ago - Stars: 2 - Forks: 1

Public-Health-Bioinformatics/irida-plugin-species-abundance

Estimate the relative abundance of sequence reads originating from different species in a sample using the IRIDA system

Language: Java - Size: 1.88 MB - Last synced at: about 1 year ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 3

Public-Health-Bioinformatics/irida-plugin-plasmid-screen

Language: Java - Size: 769 KB - Last synced at: about 1 year ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0