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Package Usage: cran: sccore
Core Utilities for Single-Cell RNA-Seq
9 versions
Latest release: 11 months ago
5 dependent packages
883 downloads last month
View more package details: https://packages.ecosyste.ms/registries/cran.r-project.org/packages/sccore
View more repository details: https://repos.ecosyste.ms/hosts/GitHub/repositories/kharchenkolab%2Fsccore
Dependent Repos 9
kharchenkolab/pagoda2
R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets- >= 0.1.1 DESCRIPTION
Size: 78.4 MB - Last synced: 7 days ago - Pushed: 3 months ago
kharchenkolab/leidenAlg
Implements the Leiden algorithm via an R interface- * DESCRIPTION
Size: 9.75 MB - Last synced: 3 months ago - Pushed: 3 months ago
khodosevichlab/CellAnnotatoR
Automated marker-based annotation of cell types- >= 0.1 DESCRIPTION
Size: 10.9 MB - Last synced: 3 months ago - Pushed: almost 2 years ago
kharchenkolab/conos
R package for the joint analysis of multiple single-cell RNA-seq datasets- >= 1.0.0 DESCRIPTION
Size: 269 MB - Last synced: 16 days ago - Pushed: 3 months ago
kharchenkolab/scITD
Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition- * DESCRIPTION
Size: 197 MB - Last synced: 5 months ago - Pushed: 9 months ago
kharchenkolab/cacoa
Single-cell Case Control Analysis- >= 1.0.0 DESCRIPTION
Size: 5.59 MB - Last synced: 4 months ago - Pushed: 4 months ago
khodosevichlab/CRMetrics
Summarization of CellRanger count metrics.- * DESCRIPTION
Size: 19.8 MB - Last synced: 17 days ago - Pushed: 3 months ago
cran/conos
:exclamation: This is a read-only mirror of the CRAN R package repository. conos — Clustering on Network of Samples. Homepage: https://github.com/kharchenkolab/conos Report bugs for this package: https://github.com/kharchenkolab/conos/issues- >= 1.0.0 DESCRIPTION
Size: 1.22 MB - Last synced: 3 months ago - Pushed: 3 months ago
cran/CRMetrics
:exclamation: This is a read-only mirror of the CRAN R package repository. CRMetrics — Cell Ranger Output Filtering and Metrics Visualization. Homepage: https://github.com/khodosevichlab/CRMetrics Report bugs for this package: https://github.com/khodosevichlab/CRMetrics/issues- * DESCRIPTION
Size: 234 KB - Last synced: 9 months ago - Pushed: 9 months ago
cran/leidenAlg
:exclamation: This is a read-only mirror of the CRAN R package repository. leidenAlg — Implements the Leiden Algorithm via an R Interface. Homepage: https://github.com/kharchenkolab/leidenAlg Report bugs for this package: https://github.com/kharchenkolab/leidenAlg/issues- * DESCRIPTION
Size: 1.84 MB - Last synced: 3 months ago - Pushed: 3 months ago
g2nb/workshop-notebooks
Jupyter notebooks intended for g2nb workshops- >0.1.2 2021_07_16_04_mstp_bootcamp/R/x86_64-conda-linux-gnu-library/3.6/conos/DESCRIPTION
- * 2021_07_16_04_mstp_bootcamp/R/x86_64-conda-linux-gnu-library/3.6/leidenAlg/DESCRIPTION
- >=0.1.1 2021_07_16_04_mstp_bootcamp/R/x86_64-conda-linux-gnu-library/3.6/pagoda2/DESCRIPTION
Size: 71.2 MB - Last synced: over 1 year ago - Pushed: over 2 years ago
Christian-Heyer/cacoa Fork of kharchenkolab/cacoa
Single-cell Case Control Analysis- > 0.1.2 DESCRIPTION
Size: 5.69 MB - Last synced: 11 months ago - Pushed: over 2 years ago
JING-XINXING/conos Fork of kharchenkolab/conos
R package for the joint analysis of multiple single-cell RNA-seq datasets- >= 1.0.0 DESCRIPTION
Size: 269 MB - Last synced: 9 months ago - Pushed: about 2 years ago