JBris/FieldNBalance Fork of Plant-Food-Research-Open/FieldNBalance

Nitrogen balance model components and test procedures

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JBris/wofost-data-assimilation

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JBris/Grapevine_Botrytis_disease_model Fork of junqi108/Grapevine_Botrytis_disease_model

Language: R - Size: 671 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 0 - Forks: 0

JBris/minio_deploy

Docker deployment for MinIO

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JBris/plumber-api-set-user

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JBris/pymc-horseshoe

Horseshoe regression model fitted in PyMC.

Language: Jupyter Notebook - Size: 290 KB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 1 - Forks: 0

JBris/nextflow-graph-machine-learning

A Nextflow pipeline demonstrating how to train graph neural networks for gene regulatory network reconstruction using DREAM5 data.

Language: Python - Size: 5.69 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 3 - Forks: 1

JBris/seaweedfs-s3-trial

Testing out SeaweedFS for s3 storage. Particularly for MLOps purposes.

Language: Python - Size: 60.5 KB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 1 - Forks: 0

JBris/time-series-airflow-kafka-spark

A simple demonstration of an Airflow-Kafka-Spark (AKS) stack for online time series forecasting.

Language: Python - Size: 699 KB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 1 - Forks: 0

JBris/pymc-mlflow-deployment

Testing deployment of PyMC models using MLFlow and BentoML.

Language: Python - Size: 119 KB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 1 - Forks: 0

JBris/deepgp_eval

Evaluating Deep Gaussian processes

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JBris/slurm-rest-api-docker

A test Docker build for SLURM with the SLURM REST API configured.

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JBris/mlflow-bentoml-integration

Testing the integration of MLFlow and BentoML

Language: Python - Size: 113 KB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 1 - Forks: 0

JBris/fastapi-react-graphql

Example of a simple FastAPI and React app using GraphQL

Language: JavaScript - Size: 277 KB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 4 - Forks: 0

JBris/prefect-surrogate-models

Demonstrating the use of Prefect to orchestrate the creation of machine learning surrogate models as applied to mechanistic crop models.

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JBris/shiny-app-tutorials

Working through tutorials for developing Shiny apps

Language: R - Size: 204 KB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 2 - Forks: 0

JBris/hypothesis-property-based-testing

Trying out the hypothesis library for property-based testing

Language: Python - Size: 9.77 KB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 1 - Forks: 0

JBris/pycaret-fugue-dask-test

Testing PyCaret, Fugue, and Dask

Language: Python - Size: 107 KB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 1 - Forks: 0

JBris/pluggy-test-python

Testing the Pluggy Python library and creating a composable pipeline.

Language: Python - Size: 11.7 KB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 1 - Forks: 0

JBris/python_data_profiler_comp

Comparison between several Python data profile libraries.

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JBris/bayes-growth-bdd

Demonstrating the use of behavior-driven development (BDD) to Bayesian growth models for assumption tracking.

Language: Python - Size: 29.8 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 1 - Forks: 0

JBris/ApsimX Fork of APSIMInitiative/ApsimX

ApsimX is the next generation of APSIM

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JBris/learn-kubernetes-basics

Going through the tutorials for learning the basics of Kubernetes

Language: Shell - Size: 17.6 KB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 1 - Forks: 0

JBris/physics_informed_neural_networks_tutorial

Going through the tutorial on Physics-informed Neural Networks: https://github.com/madagra/basic-pinn

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JBris/docker-clickhouse-postgres

Docker setup for ClickHouse and Postgres

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JBris/docker-spark-sparklyr

Docker setup for Apache Spark and the R sparklyr package

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JBris/docker-metabase-postgres

Docker setup for Metabase and Postgres

Language: Shell - Size: 11.7 KB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 2 - Forks: 0

JBris/stan-cmdstanr-docker

A Docker image to run Stan, cmdstanr, and brms for Bayesian statistical modelling

Language: Dockerfile - Size: 28.3 KB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 7 - Forks: 4

JBris/time-series-online-data-assimilation-experiments

Experiments for online learning and data assimilation for time series data.

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JBris/model-calibration-evaluation

Evaluating model calibration methods for sensitivity analysis, uncertainty analysis, optimisation, and Bayesian inference

Language: Python - Size: 3.92 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 5 - Forks: 0

JBris/synthetic-control-pymc

Tutorials for the synthetic control method for causal inference using PyMC

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JBris/SVSModelBuildDeploy Fork of HamishBrownPFR/SVSModelBuildDeploy

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JBris/sir-agent-based-modelling

Agent-based modelling of pandemics using the Susceptible, Infected, Recovered (SIR) framework.

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JBris/pymc_ode

Going through the tutorials for integrating PyMC with ODEs

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JBris/r-plumber-tutorials

Going through the tutorials for working with the Plumber package in R for developing web APIs: https://www.rplumber.io/

Language: R - Size: 16.6 KB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 1 - Forks: 0

JBris/r-packages-ebook

Working through the R Packages ebook: https://r-pkgs.org/

Language: R - Size: 40 KB - Last synced: 6 months ago - Pushed: 7 months ago - Stars: 1 - Forks: 0

JBris/apsimx-docker

Run APSIM The Next Generation using Docker

Language: Dockerfile - Size: 5.86 KB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 1 - Forks: 0

JBris/time_series_anomaly_detection_examples

Several examples of anomaly detection algorithms for time series data.

Language: Python - Size: 3.53 MB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 13 - Forks: 3

JBris/multivariate_analysis_examples

Several examples of multivariate techniques implemented in R, Python, and SAS. Multivariate concrete dataset retrieved from https://archive.ics.uci.edu/ml/datasets/Concrete+Slump+Test. Credit to Professor I-Cheng Yeh.

Language: Python - Size: 38.1 KB - Last synced: 4 months ago - Pushed: 8 months ago - Stars: 13 - Forks: 3

JBris/stan-cmdstanr-gpu-docker

A Docker image to run Stan, cmdstanr, and brms for Bayesian statistical modelling. GPU support using OpenCL is available.

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JBris/nextflow-tutorials

Working through NextFlow tutorials. See https://github.com/nextflow-io/training

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JBris/compose-elasticsearch

Docker compose for deploying Elasticsearch.

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JBris/synthetic-root-generator

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JBris/sqlkata_testing

Testing features of the SqlKata Query Builder for different database backends.

Language: C# - Size: 853 KB - Last synced: 11 months ago - Pushed: 11 months ago - Stars: 0 - Forks: 0

JBris/APSIM.Singularity Fork of APSIMInitiative/APSIM.Singularity

Size: 7.81 KB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 0 - Forks: 0

JBris/slurm_parallel_file_creation_test

Testing parallel file creation using SLURM

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JBris/apsimx-srf Fork of powerPlant/apsimx-srf

Singularity recipe files for ApsimX (https://github.com/APSIMInitiative/ApsimX)

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JBris/docker-groimp

A Docker container to run GroIMP

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JBris/mlflow-docker

Launch an MLFlow server through Docker

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JBris/m4_competition_data

Data for the fourth Makridakis Competition

Size: 74.7 MB - Last synced: 4 months ago - Pushed: over 1 year ago - Stars: 1 - Forks: 0

JBris/excel_dna_test

Testing the installation and use of the Excel-DNA package

Language: C# - Size: 9.77 KB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 1 - Forks: 0

JBris/stan-docker

A Docker image to run Stan, rstanarm, and brms for Bayesian statistical modelling

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JBris/dolphin_segmentation

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JBris/dream5_grn_data

Gold standard gene regulatory network data from the DREAM5 challenge.

Size: 46.3 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 2 - Forks: 0

JBris/gui-app-docker-test

Test to see how to run GUI apps in Docker

Language: Dockerfile - Size: 8.79 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 3 - Forks: 1

JBris/functional-structural-model-templates Fork of junqi108/functional-structural-model-templates

model templates for all common code

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JBris/ngboost Fork of stanfordmlgroup/ngboost

Natural Gradient Boosting for Probabilistic Prediction

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JBris/conformal Fork of ryantibs/conformal

Tools for conformal inference in regression

Size: 15.8 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 2 - Forks: 0

JBris/docker-h2o Fork of codelibs/docker-h2o

Docker files for H2O

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JBris/Deep-Otolith Fork of dimpolitik/Deep-Otolith

Size: 17.5 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 1 - Forks: 0

JBris/bats-core Fork of bats-core/bats-core

Bash Automated Testing System

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JBris/XGBoostLSS Fork of StatMixedML/XGBoostLSS

An extension of XGBoost to probabilistic forecasting

Size: 24.3 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 1 - Forks: 0

JBris/Functional-structural-plant-model-prototype Fork of junqi108/Functional-structural-plant-model-prototype

Developing the next generation functional-structural-plant-model for facilitating flexible configuration

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JBris/pcse Fork of ajwdewit/pcse

Repository for the Python Crop Simulation Environment

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JBris/sentiment_analysis_examples

Several examples of sentiment analysis algorithms for textual data.

Language: Python - Size: 160 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 2 - Forks: 1

JBris/react-typescript-graphql

A simple search tool to retrieve git repo information from GitHub, GitLab, and Bitbucket. Uses TypeScript and GraphQL for server-side API searches, and React.js for client-side rendering.

Language: TypeScript - Size: 657 KB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 6 - Forks: 2

JBris/vue-python-graphql

A simple search tool to retrieve git repo information from GitHub, GitLab, and Bitbucket. Uses aiohttp and Graphene for server-side API searches, and Vue.js for client-side rendering.

Language: Vue - Size: 1.47 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 10 - Forks: 2

JBris/drupal-enterprise-stack

A Docker stack supporting Drupal, RESTful & GraphQL APIs, OAuth 2 authentication, Redis, Postgres, Nginx, Adminer, Elasticsearch, and Kibana.

Language: PHP - Size: 20.8 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 2 - Forks: 0

JBris/tidymodels-mlflow-targets-docker

Run tidyverse, tidymodels, targets, carrier, and MLFlow within Docker

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JBris/linux-package-search

A simple tool to search for Linux package information from various distros. Includes Node, Knex, and Swagger. Supports archiving information into Postgres, indexing information using Elasticsearch, and caching search results using Redis.

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JBris/data_mining_group_assignment

Repo for data mining group assignment.

Language: Python - Size: 67.4 KB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 2 - Forks: 0

JBris/entity_framework_example

Simple demonstration of the Entity Framework

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JBris/openalea-apple

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JBris/image_classification_examples

Several examples of image classification algorithms for image data.

Language: Python - Size: 285 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 3 - Forks: 0

JBris/github_hooks_test

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JBris/machine-learning-r

Some examples of running R in a Docker container with machine learning and MLOps features

Language: R - Size: 1.05 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 3 - Forks: 0

JBris/time-series-kafka-demo Fork of mtpatter/time-series-kafka-demo

Fully reproducible, Dockerized, step-by-step, tutorial on how to mock a "real-time" Kafka data stream from a timestamped csv file. Detailed blog post published on Towards Data Science.

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JBris/online_gp Fork of wjmaddox/online_gp

Code repo for "Kernel Interpolation for Scalable Online Gaussian Processes"

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JBris/frontiers-palaeo-additive-modelling Fork of gavinsimpson/frontiers-palaeo-additive-modelling

Modelling and feature detection in palaeoenvironmental time series using additive models

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JBris/M4-methods Fork of Mcompetitions/M4-methods

Data, Benchmarks, and methods submitted to the M4 forecasting competition

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JBris/ml_pipeline

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JBris/kafka-graphql-examples Fork of openweb-nl/kafka-graphql-examples

A platform to test solutions for using Kafka with Graphql

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JBris/carefl Fork of piomonti/carefl

Code for "Causal autoregressive flows" - AISTATS, 2021

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JBris/findr-data-geuvadis Fork of lingfeiwang/findr-data-geuvadis

For data requests

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JBris/fishualize Fork of nschiett/fishualize

The fishualize package provides color scales and silhouettes for plotting in R based on nature’s most stunning and colorful organisms: teleost fishes (with a few chondrichthyan cameos).

Size: 29.9 MB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 4 - Forks: 0

JBris/VGAER Fork of qcydm/VGAER

Simple and efficient -- a novel unsupervised community detection with the fusion of modularity and network structure

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JBris/generative_models Fork of kamenbliznashki/generative_models

Pytorch implementations of generative models: VQVAE2, AIR, DRAW, InfoGAN, DCGAN, SSVAE

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JBris/Transformer-Explainability Fork of hila-chefer/Transformer-Explainability

[CVPR 2021] Official PyTorch implementation for Transformer Interpretability Beyond Attention Visualization, a novel method to visualize classifications by Transformer based networks.

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JBris/bnn_priors Fork of ratschlab/bnn_priors

Code for the paper "Bayesian Neural Network Priors Revisited"

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JBris/URSABench Fork of reml-lab/URSABench

Codebase for our paper "URSABench: Comprehensive Benchmarking of Approximate Bayesian Inference Methods for Deep Neural Networks"

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JBris/Replica_Exchange_Stochastic_Gradient_MCMC Fork of gaoliyao/Replica_Exchange_Stochastic_Gradient_MCMC

Code for Non-convex Learning via Replica Exchange Stochastic Gradient MCMC, ICML 2020.

Size: 1.36 MB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

JBris/csgmcmc Fork of ruqizhang/csgmcmc

Cyclical Stochastic Gradient MCMC for Bayesian Deep Learning

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JBris/Contour-Stochastic-Gradient-Langevin-Dynamics Fork of WayneDW/Contour-Stochastic-Gradient-Langevin-Dynamics

An elegant adaptive importance sampling algorithms for simulations of multi-modal distributions (NeurIPS'20)

Size: 113 MB - Last synced: about 1 year ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

JBris/PGMExplainer Fork of vunhatminh/PGMExplainer

Generating PGM Explanation for GNN predictions

Size: 44 MB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

JBris/Variance_Reduced_Replica_Exchange_SGMCMC Fork of WayneDW/Variance_Reduced_Replica_Exchange_SGMCMC

Variance reduction in energy estimators accelerates the exponential convergence in deep learning (ICLR'21)

Size: 265 MB - Last synced: about 1 year ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 0

JBris/cnn-surrogate Fork of cics-nd/cnn-surrogate

Bayesian deep convolutional encoder-decoder networks for surrogate modeling and uncertainty quantification

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JBris/CASAL2 Fork of NIWAFisheriesModelling/CASAL2

Integrated Population Dynamics Model (Casal2)

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JBris/vi_evaluation Fork of saudiwin/vi_evaluation

Repository for R code for variational inference approximation from Yao, Vehtari, Simpson and Gelman (2018)

Size: 19.5 KB - Last synced: about 1 year ago - Pushed: over 6 years ago - Stars: 0 - Forks: 0

JBris/karateclub Fork of benedekrozemberczki/karateclub

Karate Club: An API Oriented Open-source Python Framework for Unsupervised Learning on Graphs (CIKM 2020)

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JBris/DAG-GNN Fork of fishmoon1234/DAG-GNN

Size: 28.3 KB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0