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GitHub / JBris / prefect-surrogate-models
Demonstrating the use of Prefect to orchestrate the creation of machine learning surrogate models as applied to mechanistic crop models.
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JBris%2Fprefect-surrogate-models
Stars: 2
Forks: 1
Open Issues: 5
License: mit
Language: HTML
Repo Size: 7.11 MB
Dependencies:
266
Created: 8 months ago
Updated: 2 months ago
Last pushed: about 2 months ago
Last synced: about 2 months ago
Commit Stats
Commits: 17
Authors: 2
Mean commits per author: 8.5
Development Distribution Score: 0.235
More commit stats: https://commits.ecosyste.ms/hosts/GitHub/repositories/JBris/prefect-surrogate-models
Topics: bayesian-optimization, botorch, dask, docker, docker-compose, dvc, gpytorch, mechanistic-models, minio, mlflow, mlflow-tracking-server, mlops, pcse, prefect, prefect-agent, process-modeling, surrogate-based-optimization, surrogate-models, variational-bayes, variational-inference
Files
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Readme
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Dependencies
.github/workflows/docs.yaml
actions
- JamesIves/github-pages-deploy-action v4.4.1 composite
- actions/checkout v3 composite
- actions/setup-python v3 composite
- actions/checkout v3 composite
- actions/setup-python v3 composite
docker-compose.yml
docker
- $GITHUB_CONTAINER_REPO latest
- adminer ${ADMINER_TAG}
- minio/mc ${MINIO_MC_TAG}
- minio/minio ${MINIO_TAG}
- portainer/portainer-ce ${PORTAINER_TAG}
- postgres ${POSTGRES_TAG}
- prefecthq/prefect ${PREFECT_TAG}
services/python/Dockerfile
docker
- python ${PYTHON_TAG} build
- python ${PYTHON_TAG}
- Babel ==2.12.1
- Flask ==2.3.3
- GitPython ==3.1.31
- Jinja2 ==3.1.2
- Mako ==1.2.4
- Markdown ==3.4.4
- MarkupSafe ==2.1.3
- PCSE ==5.5.5
- Pillow ==10.0.0
- PyJWT ==2.8.0
- PyYAML ==6.0
- Pygments ==2.16.1
- SQLAlchemy ==1.4.49
- Sphinx ==7.2.5
- Werkzeug ==2.3.7
- adbnx-adapter ==4.2.0
- aiohttp ==3.8.5
- aiohttp-retry ==2.8.3
- aiosignal ==1.3.1
- aiosqlite ==0.19.0
- alabaster ==0.7.13
- alembic ==1.11.1
- amqp ==5.1.1
- antlr4-python3-runtime ==4.9.3
- anyio ==3.7.1
- appdirs ==1.4.4
- apprise ==1.5.0
- asgi-lifespan ==2.1.0
- async-timeout ==4.0.3
- asyncpg ==0.28.0
- asyncssh ==2.13.2
- atpublic ==4.0
- attrs ==23.1.0
- billiard ==4.1.0
- black ==23.9.0
- blinker ==1.6.2
- boto3 ==1.26.161
- botocore ==1.29.161
- cachetools ==5.3.1
- celery ==5.3.1
- certifi ==2023.7.22
- cffi ==1.15.1
- charset-normalizer ==3.2.0
- click ==8.1.7
- click-didyoumean ==0.3.0
- click-plugins ==1.1.1
- click-repl ==0.3.0
- cloudpickle ==2.2.1
- cmaes ==0.10.0
- cmake ==3.27.4.1
- colorama ==0.4.6
- colorlog ==6.7.0
- configobj ==5.0.8
- contourpy ==1.1.0
- coolname ==2.2.0
- croniter ==1.4.1
- cryptography ==41.0.3
- cycler ==0.11.0
- dask ==2023.9.2
- databricks-cli ==0.17.7
- dateparser ==1.1.8
- decorator ==5.1.1
- dictdiffer ==0.9.0
- diskcache ==5.6.3
- distributed ==2023.9.2
- distro ==1.8.0
- docker ==6.1.3
- docutils ==0.20.1
- dpath ==2.1.6
- dulwich ==0.21.6
- dvc ==3.19.0
- dvc-data ==2.16.1
- dvc-http ==2.30.2
- dvc-objects ==1.0.1
- dvc-render ==0.5.3
- dvc-studio-client ==0.15.0
- dvc-task ==0.3.0
- entrypoints ==0.4
- et-xmlfile ==1.1.0
- exceptiongroup ==1.1.3
- fastapi ==0.103.1
- filelock ==3.12.3
- flake8 ==6.1.0
- flatten-dict ==0.4.2
- flufl.lock ==7.1.1
- fonttools ==4.42.1
- frozenlist ==1.4.0
- fsspec ==2023.9.0
- funcy ==2.0
- gevent ==22.10.2
- gitdb ==4.0.10
- google-auth ==2.23.0
- gpytorch ==1.10
- grandalf ==0.8
- graphviz ==0.20.1
- greenlet ==2.0.2
- griffe ==0.36.2
- gunicorn ==20.1.0
- h11 ==0.14.0
- h2 ==4.1.0
- h5netcdf ==1.2.0
- h5py ==3.9.0
- hpack ==4.0.0
- httpcore ==0.18.0
- httpx ==0.25.0
- hydra-core ==1.3.2
- hyperframe ==6.0.1
- idna ==3.4
- imagesize ==1.4.1
- importlib-metadata ==6.8.0
- iniconfig ==2.0.0
- ipython-genutils ==0.2.0
- iterative-telemetry ==0.0.8
- itsdangerous ==2.1.2
- jaxtyping ==0.2.21
- jmespath ==1.0.1
- joblib ==1.2.0
- jsonpatch ==1.33
- jsonpointer ==2.4
- jsonschema ==4.19.1
- jsonschema-specifications ==2023.7.1
- kiwisolver ==1.4.5
- kombu ==5.3.2
- kubernetes ==28.1.0
- linear-operator ==0.5.2
- lit ==16.0.6
- locket ==1.0.0
- markdown-it-py ==3.0.0
- matplotlib ==3.7.1
- mccabe ==0.7.0
- mdurl ==0.1.2
- mlflow ==2.4.1
- mpmath ==1.3.0
- msgpack ==1.0.6
- multidict ==6.0.4
- mypy-extensions ==1.0.0
- networkx ==3.1
- numpy ==1.25.0
- nvidia-cublas-cu11 ==11.10.3.66
- nvidia-cuda-cupti-cu11 ==11.7.101
- nvidia-cuda-nvrtc-cu11 ==11.7.99
- nvidia-cuda-runtime-cu11 ==11.7.99
- nvidia-cudnn-cu11 ==8.5.0.96
- nvidia-cufft-cu11 ==10.9.0.58
- nvidia-curand-cu11 ==10.2.10.91
- nvidia-cusolver-cu11 ==11.4.0.1
- nvidia-cusparse-cu11 ==11.7.4.91
- nvidia-nccl-cu11 ==2.14.3
- nvidia-nvtx-cu11 ==11.7.91
- oauthlib ==3.2.2
- omegaconf ==2.3.0
- openpyxl ==3.1.2
- optuna ==3.2.0
- orjson ==3.9.6
- packaging ==23.1
- pandas ==2.0.2
- partd ==1.4.1
- pathspec ==0.11.2
- pendulum ==2.1.2
- pip ==23.2.1
- platformdirs ==3.10.0
- pluggy ==1.3.0
- prefect ==2.13.2
- prompt-toolkit ==3.0.39
- protobuf ==4.24.3
- psutil ==5.9.5
- psycopg2 ==2.9.6
- pyarrow ==12.0.1
- pyasn1 ==0.5.0
- pyasn1-modules ==0.3.0
- pycodestyle ==2.11.0
- pycparser ==2.21
- pydantic ==1.10.12
- pydot ==1.4.2
- pyflakes ==3.1.0
- pygit2 ==1.13.0
- pygtrie ==2.5.0
- pyparsing ==3.1.1
- pytest ==7.4.2
- python-arango ==7.7.0
- python-dateutil ==2.8.2
- python-decouple ==3.8
- python-slugify ==8.0.1
- pytz ==2023.3.post1
- pytzdata ==2020.1
- querystring-parser ==1.2.4
- readchar ==4.0.5
- referencing ==0.30.2
- regex ==2023.8.8
- requests ==2.28.2
- requests-oauthlib ==1.3.1
- requests-toolbelt ==1.0.0
- rich ==13.5.2
- rpds-py ==0.10.3
- rsa ==4.9
- ruamel.yaml ==0.17.32
- ruamel.yaml.clib ==0.2.7
- s3transfer ==0.6.2
- scikit-learn ==1.3.0
- scipy ==1.11.0
- scmrepo ==1.3.1
- setuptools ==68.0.0
- shortuuid ==1.0.11
- shtab ==1.6.4
- six ==1.16.0
- smmap ==5.0.0
- sniffio ==1.3.0
- snowballstemmer ==2.2.0
- sortedcontainers ==2.4.0
- sphinx-argparse ==0.4.0
- sphinxcontrib-applehelp ==1.0.7
- sphinxcontrib-devhelp ==1.0.5
- sphinxcontrib-htmlhelp ==2.0.4
- sphinxcontrib-jsmath ==1.0.1
- sphinxcontrib-qthelp ==1.0.6
- sphinxcontrib-serializinghtml ==1.1.9
- sqlparse ==0.4.3
- sqltrie ==0.7.0
- starlette ==0.27.0
- sympy ==1.12
- tabulate ==0.9.0
- tblib ==2.0.0
- text-unidecode ==1.3
- threadpoolctl ==3.2.0
- toml ==0.10.2
- tomli ==2.0.1
- tomlkit ==0.12.1
- toolz ==0.12.0
- torch ==2.0.1
- tornado ==6.3.3
- tqdm ==4.65.0
- traitlets-pcse ==5.0.0.dev0
- triton ==2.0.0
- typeguard ==2.13.3
- typer ==0.9.0
- typing_extensions ==4.7.1
- tzdata ==2023.3
- tzlocal ==5.0.1
- urllib3 ==1.26.15
- uvicorn ==0.23.2
- vine ==5.0.0
- voluptuous ==0.13.1
- wcwidth ==0.2.6
- websocket-client ==1.6.2
- websockets ==11.0.3
- wheel ==0.38.4
- yarl ==1.9.2
- zc.lockfile ==3.0.post1
- zict ==3.0.0
- zipp ==3.16.2
- zope.event ==5.0
- zope.interface ==6.0