YuLab-SMU/fanyi

Translate Words or Sentences via Online Translators

Language: R - Size: 188 KB - Last synced: 16 days ago - Pushed: about 2 months ago - Stars: 35 - Forks: 5

YuLab-SMU/ggsc

🧠 Visualizing Single Cell and Spatial Transcriptomics

Language: R - Size: 72.5 MB - Last synced: 4 days ago - Pushed: 4 days ago - Stars: 32 - Forks: 4

YuLab-SMU/ggfun

useful functions for ggplot

Language: R - Size: 81.1 KB - Last synced: 2 days ago - Pushed: 4 days ago - Stars: 15 - Forks: 3

YuLab-SMU/treedata-book

:books: a complete reference book for treeio, tidytree and ggtree packages

Language: TeX - Size: 344 MB - Last synced: 15 days ago - Pushed: almost 2 years ago - Stars: 99 - Forks: 50

YuLab-SMU/DOSE

:mask: Disease Ontology Semantic and Enrichment analysis

Language: R - Size: 78.6 MB - Last synced: 15 days ago - Pushed: 16 days ago - Stars: 105 - Forks: 34

YuLab-SMU/MicrobiotaProcess

:microbe: A comprehensive R package for deep mining microbiome

Language: R - Size: 6.86 MB - Last synced: 17 days ago - Pushed: 18 days ago - Stars: 160 - Forks: 35

YuLab-SMU/MicrobiomeProfiler

:microbe: A shiny package for microbiome functional enrichment analysis

Language: R - Size: 12.1 MB - Last synced: 16 days ago - Pushed: 17 days ago - Stars: 33 - Forks: 7

YuLab-SMU/ReactomePA

Reactome Pathway Analysis

Language: R - Size: 5.47 MB - Last synced: 16 days ago - Pushed: 17 days ago - Stars: 36 - Forks: 10

YuLab-SMU/GOSemSim

:golf: GO-terms Semantic Similarity Measures

Language: R - Size: 27.4 MB - Last synced: 16 days ago - Pushed: 17 days ago - Stars: 55 - Forks: 26

YuLab-SMU/clusterProfiler

:bar_chart: A universal enrichment tool for interpreting omics data

Language: R - Size: 15.1 MB - Last synced: 16 days ago - Pushed: 17 days ago - Stars: 947 - Forks: 245

YuLab-SMU/enrichplot

Visualization of Functional Enrichment Result

Language: R - Size: 658 KB - Last synced: 16 days ago - Pushed: 17 days ago - Stars: 216 - Forks: 61

YuLab-SMU/treeio

:seedling: Base Classes and Functions for Phylogenetic Tree Input and Output

Language: R - Size: 3.01 MB - Last synced: 16 days ago - Pushed: 17 days ago - Stars: 93 - Forks: 23

YuLab-SMU/seqcombo

Visualization tool for genetic reassortment

Language: R - Size: 10.6 MB - Last synced: 16 days ago - Pushed: 17 days ago - Stars: 21 - Forks: 6

YuLab-SMU/meshes

:stethoscope: MeSH Enrichment and Semantic analyses

Language: R - Size: 1.71 MB - Last synced: 16 days ago - Pushed: 17 days ago - Stars: 9 - Forks: 4

YuLab-SMU/ggtreeSpace

🕸️Exploring phylomorphospace using 'ggtree'

Language: R - Size: 394 KB - Last synced: 16 days ago - Pushed: 17 days ago - Stars: 4 - Forks: 2

YuLab-SMU/ggtreeDendro

Drawing 'dendrogram' using 'ggtree'

Language: R - Size: 57.6 KB - Last synced: 16 days ago - Pushed: 17 days ago - Stars: 10 - Forks: 3

YuLab-SMU/ChIPseeker

:dart: ChIP peak Annotation, Comparison and Visualization

Language: R - Size: 22.9 MB - Last synced: 16 days ago - Pushed: 17 days ago - Stars: 209 - Forks: 74

YuLab-SMU/ggtreeExtra

:lemon: Add Geom Layers On Circular Or Other Layout Tree Of “ggtree”

Language: R - Size: 1.63 MB - Last synced: 18 days ago - Pushed: 18 days ago - Stars: 83 - Forks: 15

YuLab-SMU/tigeR

🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package

Language: R - Size: 141 MB - Last synced: 17 days ago - Pushed: 18 days ago - Stars: 5 - Forks: 5

YuLab-SMU/aplot

Decorate a plot with associated information

Language: R - Size: 2.12 MB - Last synced: 5 days ago - Pushed: 4 months ago - Stars: 90 - Forks: 14

YuLab-SMU/clusterProfiler_protocol

omics data analysis using clusterProfiler ;)

Language: R - Size: 62.8 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 1 - Forks: 5

YuLab-SMU/SVP

Language: R - Size: 667 KB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 3 - Forks: 0

YuLab-SMU/yulab-smu.github.io

:house: Homepage for YuLab-SMU

Language: HTML - Size: 60.9 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 12 - Forks: 4

YuLab-SMU/ggtree

:christmas_tree:Visualization and annotation of phylogenetic trees

Language: R - Size: 16 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 797 - Forks: 169

YuLab-SMU/aplotExtra

Creating composite plot using 'aplot'

Language: R - Size: 43.9 KB - Last synced: 21 days ago - Pushed: 4 months ago - Stars: 8 - Forks: 4

YuLab-SMU/shinyTempSignal

Explore Temporal and Other Phylogenetic Signals

Language: R - Size: 1.28 MB - Last synced: 24 days ago - Pushed: 3 months ago - Stars: 9 - Forks: 6

YuLab-SMU/GeoTcgaData

Processed rna-seq data, copy number variation data, and methylation data on GEO and TCGA

Language: R - Size: 17.2 MB - Last synced: 11 days ago - Pushed: about 1 year ago - Stars: 21 - Forks: 1

YuLab-SMU/plotbb

:paintbrush: Grammar of Graphics for base plot

Language: R - Size: 864 KB - Last synced: 11 days ago - Pushed: over 2 years ago - Stars: 52 - Forks: 7

YuLab-SMU/simpleGO

Simple GO Enrichment Analysis

Language: R - Size: 3.91 KB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 0

YuLab-SMU/virus_plot

Language: R - Size: 0 Bytes - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 0

YuLab-SMU/ggbreak

:broken_heart: An implementation of scale functions for setting axis breaks of a 'gg' plot.

Language: R - Size: 96.7 KB - Last synced: 2 months ago - Pushed: 4 months ago - Stars: 110 - Forks: 4

YuLab-SMU/tidytree

:shower:A Tidy Tool for Phylogenetic Tree Data Manipulation

Language: R - Size: 269 KB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 47 - Forks: 15

YuLab-SMU/multiEnrichment

multi-omic enrichment analysis

Language: R - Size: 375 KB - Last synced: 5 months ago - Pushed: 5 months ago - Stars: 3 - Forks: 0

YuLab-SMU/scholar Fork of jkeirstead/scholar

Analyse citation data from Google Scholar

Language: R - Size: 4.79 MB - Last synced: 5 months ago - Pushed: 5 months ago - Stars: 35 - Forks: 5

YuLab-SMU/yulab.utils

Miscellaneous functions commonly used by 'YuLab-SMU'.

Language: R - Size: 372 KB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 28 - Forks: 10

YuLab-SMU/ProjectYulab

:next_track_button: Small coding tasks that enable you to participate in our development

Size: 6.84 KB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 26 - Forks: 3

YuLab-SMU/seqmagick

sequence manipulation

Language: R - Size: 460 KB - Last synced: 25 days ago - Pushed: 4 months ago - Stars: 6 - Forks: 2

YuLab-SMU/MMINP

Microbe-Metabolite INteractions-based metabolic profiles Predictor

Language: R - Size: 11.8 MB - Last synced: 6 months ago - Pushed: about 1 year ago - Stars: 8 - Forks: 1

YuLab-SMU/biomedical-knowledge-mining-book

:books: Biomedical knowledge mining using GOSemSim and clusterProfiler

Language: TeX - Size: 240 MB - Last synced: 7 months ago - Pushed: 12 months ago - Stars: 59 - Forks: 24

YuLab-SMU/createKEGGdb

Create KEGG.db Package

Language: R - Size: 58.6 KB - Last synced: 7 months ago - Pushed: about 1 year ago - Stars: 51 - Forks: 17

YuLab-SMU/ggmsa

:traffic_light: Visualizing publication-quality multiple sequence alignment using ggplot2

Language: R - Size: 11.5 MB - Last synced: 7 months ago - Pushed: almost 2 years ago - Stars: 177 - Forks: 19

YuLab-SMU/supplemental_Tgs

Language: Roff - Size: 62.9 MB - Last synced: 8 months ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

YuLab-SMU/UltraPseR

Wappers for UltraPse in R

Language: C++ - Size: 460 KB - Last synced: 10 months ago - Pushed: about 1 year ago - Stars: 0 - Forks: 1

YuLab-SMU/tigeR.data

Language: R - Size: 243 MB - Last synced: 10 months ago - Pushed: 11 months ago - Stars: 0 - Forks: 1

YuLab-SMU/survival-guide

YuLab的生存秘笈

Size: 10.7 KB - Last synced: 10 months ago - Pushed: over 2 years ago - Stars: 16 - Forks: 0

YuLab-SMU/Supplemental-MMINP

Language: R - Size: 81.5 MB - Last synced: 10 months ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

YuLab-SMU/Supplemental_ggtree_placement

Supplementary code and data

Language: TeX - Size: 13.5 MB - Last synced: 10 months ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

YuLab-SMU/supplemental-ggmsa

Language: R - Size: 106 MB - Last synced: 10 months ago - Pushed: about 2 years ago - Stars: 1 - Forks: 2

YuLab-SMU/supplemental-ggbreak

Language: TeX - Size: 76.6 MB - Last synced: 10 months ago - Pushed: over 2 years ago - Stars: 5 - Forks: 3

YuLab-SMU/supplemental-clusterProfiler-v4

Language: TeX - Size: 35.1 MB - Last synced: 10 months ago - Pushed: almost 3 years ago - Stars: 5 - Forks: 2

YuLab-SMU/pkgdocs

Language: Makefile - Size: 5.9 MB - Last synced: 10 months ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 0

YuLab-SMU/MSGNN

Language: Julia - Size: 118 KB - Last synced: 10 months ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

YuLab-SMU/mTAS

A snakemake workflow for comprehensive analysis of toxin-antitoxin systems

Language: Shell - Size: 26.8 MB - Last synced: 10 months ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 2

YuLab-SMU/msacolor 📦

Language: R - Size: 51.3 MB - Last synced: 10 months ago - Pushed: almost 5 years ago - Stars: 4 - Forks: 0

YuLab-SMU/misc

Size: 98.6 KB - Last synced: 10 months ago - Pushed: over 5 years ago - Stars: 3 - Forks: 0

YuLab-SMU/MPO.db

Language: R - Size: 44.9 KB - Last synced: 10 months ago - Pushed: about 1 year ago - Stars: 1 - Forks: 1

YuLab-SMU/lab_dot_files

Language: Vim script - Size: 4.88 KB - Last synced: 10 months ago - Pushed: almost 5 years ago - Stars: 2 - Forks: 1

YuLab-SMU/iggtree

interactive tree viewer using ggtree + shiny

Language: R - Size: 184 KB - Last synced: 10 months ago - Pushed: almost 5 years ago - Stars: 6 - Forks: 1

YuLab-SMU/HDO.db

A new version of DO.db

Language: R - Size: 3.27 MB - Last synced: 10 months ago - Pushed: over 1 year ago - Stars: 4 - Forks: 5

YuLab-SMU/HCCPS

HCC prognostic score

Language: R - Size: 220 KB - Last synced: 10 months ago - Pushed: 11 months ago - Stars: 0 - Forks: 0

YuLab-SMU/gson-files

Language: HTML - Size: 28 MB - Last synced: 10 months ago - Pushed: almost 2 years ago - Stars: 1 - Forks: 2

YuLab-SMU/ggmsaBioWorkshop2021

Language: Dockerfile - Size: 9.32 MB - Last synced: 10 months ago - Pushed: over 2 years ago - Stars: 3 - Forks: 1

YuLab-SMU/ggacmap

plotting acmap using ggplot2

Language: R - Size: 1.62 MB - Last synced: 10 months ago - Pushed: almost 5 years ago - Stars: 1 - Forks: 0

YuLab-SMU/clusterProfiler.dplyr 📦

dplyr verbs for clusterProfiler outputs

Language: R - Size: 209 KB - Last synced: 10 months ago - Pushed: about 4 years ago - Stars: 11 - Forks: 2

YuLab-SMU/treedataverse

Meta package for processing and visualizing tree with data

Language: R - Size: 248 KB - Last synced: 10 months ago - Pushed: over 2 years ago - Stars: 21 - Forks: 1

YuLab-SMU/clusterProfiler-book 📦

a complete reference book for clusterProfiler and its sub-packages

Language: TeX - Size: 49.7 MB - Last synced: 7 months ago - Pushed: almost 3 years ago - Stars: 12 - Forks: 9

YuLab-SMU/ChIPseeker_current_protocols

Size: 1.84 MB - Last synced: 10 months ago - Pushed: almost 2 years ago - Stars: 1 - Forks: 0

YuLab-SMU/ecluster

Base Classes and Functions for Clustering Experimental Assays

Language: R - Size: 22.5 KB - Last synced: 10 months ago - Pushed: 11 months ago - Stars: 0 - Forks: 2

YuLab-SMU/MP_supplementary_file

Language: R - Size: 107 MB - Last synced: 10 months ago - Pushed: over 1 year ago - Stars: 3 - Forks: 1

YuLab-SMU/COSemSim

An R package measures semantic similarity value for cell types, genes and proteins

Language: R - Size: 43.5 MB - Last synced: 10 months ago - Pushed: almost 2 years ago - Stars: 1 - Forks: 1

YuLab-SMU/nCov2019

:microbe: Exploring COVID-19 data

Language: R - Size: 11.9 MB - Last synced: 7 months ago - Pushed: over 1 year ago - Stars: 19 - Forks: 7

YuLab-SMU/HPO.db

Language: R - Size: 31.3 KB - Last synced: 10 months ago - Pushed: 11 months ago - Stars: 1 - Forks: 1

YuLab-SMU/wget

download files in R using wget -c

Language: R - Size: 6.26 MB - Last synced: 10 months ago - Pushed: about 4 years ago - Stars: 16 - Forks: 3

YuLab-SMU/ggcircos

Language: R - Size: 69.3 KB - Last synced: 8 months ago - Pushed: about 1 year ago - Stars: 4 - Forks: 1

YuLab-SMU/TDbook

A Companion Package for the Book "Data Integration, Manipulation and Visualization of Phylogenetic Trees"

Language: R - Size: 4.83 MB - Last synced: 10 months ago - Pushed: over 1 year ago - Stars: 13 - Forks: 3

YuLab-SMU/tidydr

Language: R - Size: 42 KB - Last synced: 25 days ago - Pushed: 4 months ago - Stars: 13 - Forks: 5

YuLab-SMU/MicrobiotaProcessWorkshop

The workshop of microbiome datasets analysis using MicrobiotaProcess

Language: Makefile - Size: 23.9 MB - Last synced: 10 months ago - Pushed: over 3 years ago - Stars: 6 - Forks: 7

YuLab-SMU/docs

Size: 2.11 MB - Last synced: 12 months ago - Pushed: about 1 year ago - Stars: 14 - Forks: 3

YuLab-SMU/.github

Size: 10.7 KB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 0 - Forks: 0

YuLab-SMU/wikiprofiler

Language: R - Size: 3.06 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 3 - Forks: 4

YuLab-SMU/plotting-tree-with-data-using-ggtreeExtra

Language: TeX - Size: 142 MB - Last synced: 7 months ago - Pushed: almost 3 years ago - Stars: 23 - Forks: 7

YuLab-SMU/gson

Language: R - Size: 123 KB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 2 - Forks: 3

YuLab-SMU/BMplot

Base Modification Visualization

Language: R - Size: 2 MB - Last synced: 9 months ago - Pushed: almost 2 years ago - Stars: 4 - Forks: 2

YuLab-SMU/CBNplot Fork of noriakis/CBNplot

Bayesian network plot for the enrichment analysis results

Language: R - Size: 1.51 MB - Last synced: 10 months ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0