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GitHub / YuLab-SMU / MicrobiotaProcess
:microbe: A comprehensive R package for deep mining microbiome
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/YuLab-SMU%2FMicrobiotaProcess
Stars: 160
Forks: 35
Open Issues: 81
License: None
Language: R
Repo Size: 6.86 MB
Dependencies:
60
Created: about 5 years ago
Updated: 1 day ago
Last pushed: 2 days ago
Last synced: 1 day ago
Commit Stats
Commits: 1314
Authors: 8
Mean commits per author: 164.25
Development Distribution Score: 0.014
More commit stats: https://commits.ecosyste.ms/hosts/GitHub/repositories/YuLab-SMU/MicrobiotaProcess
Topics: microbiome, microbiome-analysis, microbiome-data, rstats
Files
Dependencies
- R >= 4.0.0 depends
- Biostrings * imports
- MASS * imports
- SummarizedExperiment * imports
- ape * imports
- coin * imports
- dplyr * imports
- dtplyr * imports
- foreach * imports
- ggplot2 * imports
- ggrepel * imports
- ggsignif * imports
- ggstar * imports
- ggtree * imports
- ggtreeExtra * imports
- grDevices * imports
- magrittr * imports
- methods * imports
- patchwork * imports
- pillar * imports
- plyr * imports
- rlang * imports
- stats * imports
- tibble * imports
- tidyr * imports
- tidyselect * imports
- tidytree >= 0.3.9 imports
- treeio >= 1.17.2 imports
- utils * imports
- vegan * imports
- zoo * imports
- DECIPHER * suggests
- S4Vectors * suggests
- aplot * suggests
- biomformat * suggests
- cli * suggests
- corrr * suggests
- forcats * suggests
- ggVennDiagram * suggests
- ggalluvial >= 0.11.1 suggests
- ggh4x * suggests
- gghalves * suggests
- ggnewscale * suggests
- ggside * suggests
- ggupset * suggests
- glue * suggests
- hopach * suggests
- knitr * suggests
- nlme * suggests
- phangorn * suggests
- phyloseq * suggests
- prettydoc * suggests
- purrr * suggests
- randomForest * suggests
- rmarkdown * suggests
- scales * suggests
- seqmagick * suggests
- testthat * suggests
- withr * suggests
- yaml * suggests