btmartin721/SNPio

API to read, write, and filter DNA sequence alignment files

Language: Python - Size: 108 MB - Last synced: 25 days ago - Pushed: 25 days ago - Stars: 2 - Forks: 1

btmartin721/visualize_distributions

Simple little script to visualize a few types of distributions, given common parameter settings.

Language: Python - Size: 17.6 KB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 0 - Forks: 0

btmartin721/PG-SUI

Python machine learining API to impute missing genotypes from population genomic data

Language: Python - Size: 58.5 MB - Last synced: 1 day ago - Pushed: 8 months ago - Stars: 3 - Forks: 1

btmartin721/GeoGenIE

Predict geographic coordinates from genome-wide SNPs using deep learning

Language: Python - Size: 2.47 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 1 - Forks: 1

btmartin721/locator Fork of kr-colab/locator

deep learning prediction of geographic location from individual genome sequences

Language: Python - Size: 9.52 MB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 0 - Forks: 0

btmartin721/makePopMap

Python script to add population identifiers to STRUCTURE, PLINK, and PHYLIP files

Language: Python - Size: 50.8 KB - Last synced: 7 months ago - Pushed: over 3 years ago - Stars: 0 - Forks: 1

btmartin721/parallelMrBayes

Runs MrBayes on multiple loci in parallel

Language: Perl - Size: 13.7 KB - Last synced: 7 months ago - Pushed: about 6 years ago - Stars: 0 - Forks: 0

btmartin721/acamel_filemanager

Automated system to manage acamel project analyses.

Language: JavaScript - Size: 315 KB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 0 - Forks: 0

btmartin721/fileman

Research project file manager

Language: JavaScript - Size: 313 KB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 0 - Forks: 0

btmartin721/ClineHelpR

Detects Outliers and plots genomic clines from BGC output, and extends the plotting functionality of INTROGRESS to Correlate genomic clines and hybrid indices with Environmental Variables

Language: R - Size: 93.4 MB - Last synced: 7 months ago - Pushed: almost 2 years ago - Stars: 12 - Forks: 1

btmartin721/acamel-cookiecutter

cookiecutter template for consistency with directory structure among analyses

Language: Shell - Size: 2.93 KB - Last synced: 9 months ago - Pushed: 9 months ago - Stars: 0 - Forks: 0

btmartin721/FSPTS

Language: Python - Size: 597 KB - Last synced: 10 months ago - Pushed: 10 months ago - Stars: 0 - Forks: 0

btmartin721/raxml_ascbias

Script for removing or counting invariant sites for the RAxML ascertainment bias corrections

Language: Python - Size: 25.4 KB - Last synced: about 1 year ago - Pushed: almost 6 years ago - Stars: 11 - Forks: 1

btmartin721/uml_imputer

Impute missing SNP data using unsupervised machine learning

Language: Python - Size: 1.39 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

btmartin721/file_converters

File conversion scripts for DNA sequence data

Language: Python - Size: 55.7 KB - Last synced: about 1 year ago - Pushed: about 3 years ago - Stars: 2 - Forks: 1

btmartin721/btmartin721

Size: 49.8 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

btmartin721/arcGIS

Scripts for processing arcGIS files.

Language: Python - Size: 21.5 KB - Last synced: about 1 year ago - Pushed: about 5 years ago - Stars: 2 - Forks: 0

btmartin721/ddrad_scripts

Random scripts for dealing with ddRAD data, including output from pyRAD

Language: Python - Size: 18.6 KB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 1 - Forks: 1

btmartin721/coordinate_converter

Used to convert GPS coordinates from one format to another.

Language: Python - Size: 81.1 KB - Last synced: about 1 year ago - Pushed: about 5 years ago - Stars: 1 - Forks: 0

btmartin721/stephenajulu Fork of stephenajulu/stephenajulu

My Bio

Size: 7.3 MB - Last synced: about 1 year ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0

btmartin721/mecr_boxturtle

Collection of scripts for doing and plotting machine learning species delimitation results

Language: R - Size: 119 KB - Last synced: about 1 year ago - Pushed: about 3 years ago - Stars: 1 - Forks: 0

btmartin721/construct_pipeline

Pipeline for running conStruct on a distributed HPC system

Language: R - Size: 1.98 MB - Last synced: about 1 year ago - Pushed: almost 5 years ago - Stars: 1 - Forks: 0

btmartin721/pyfuncs

Python functions that I commonly use.

Language: Python - Size: 2.93 KB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

btmartin721/R_scripts

Scripts written in R

Language: R - Size: 42 KB - Last synced: about 1 year ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 1

btmartin721/phylip2eigenstrat

Python script to generate .snp and .ind Eigenstrat files from a PHYLIP infile

Language: Python - Size: 238 KB - Last synced: 7 months ago - Pushed: about 6 years ago - Stars: 2 - Forks: 1

btmartin721/scripts Fork of tkchafin/scripts

Random scripts, mostly for dealing with RADseq data and DNA sequence alignments

Language: Perl - Size: 198 KB - Last synced: about 1 year ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0

btmartin721/dfoil_hdf5 Fork of jbpease/dfoil

DFOIL: Introgression Testing for Five Taxa

Language: Python - Size: 5.08 MB - Last synced: about 1 year ago - Pushed: almost 5 years ago - Stars: 0 - Forks: 0

btmartin721/pbs_scripts

Some PBS scripts I used to submit my jobs to the University of Arkansas's HPC cluster

Language: Shell - Size: 27.3 KB - Last synced: about 1 year ago - Pushed: almost 5 years ago - Stars: 0 - Forks: 0

btmartin721/bash_scripts

Random bash scripts for working on the AHPCC cluster and for processing input and output files for various programs

Language: Shell - Size: 13.7 KB - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0

btmartin721/hzarloop Fork of brianjp93/hzarloop

A python based extension to the HZAR R package, which allow for massively parallel cline fitting. Scalable to potentially 1000's of cpu's for faster data analysis.

Language: Python - Size: 228 KB - Last synced: about 1 year ago - Pushed: almost 8 years ago - Stars: 0 - Forks: 0

btmartin721/ddRADSeqTools Fork of batladystark/ddRADSeqTools

Size: 1.95 KB - Last synced: about 1 year ago - Pushed: over 6 years ago - Stars: 0 - Forks: 0

btmartin721/radseq Fork of pimbongaerts/radseq

Python scripts for parsing/analyses of RAD-seq data

Language: Python - Size: 486 KB - Last synced: about 1 year ago - Pushed: about 6 years ago - Stars: 0 - Forks: 0