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GitHub / btmartin721 / ClineHelpR

Detects Outliers and plots genomic clines from BGC output, and extends the plotting functionality of INTROGRESS to Correlate genomic clines and hybrid indices with Environmental Variables

JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/btmartin721%2FClineHelpR

Stars: 12
Forks: 1
Open Issues: 4

License: gpl-3.0
Language: R
Repo Size: 93.4 MB
Dependencies: 452

Created: about 4 years ago
Updated: 8 months ago
Last pushed: almost 2 years ago
Last synced: 6 months ago

Topics: bgc, chromosome, enmeval, genomic-cline, hybrid-zone, hybridization, ideogram, introgress, introgression, maxent, plot, r, r-package, raster

Files

Readme

Dependencies

environment.yml conda

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alsa-lib 1.2.3
anyio 3.3.0
argon2-cffi 20.1.0
async_generator 1.10
attrs 21.2.0
babel 2.9.1
backports 1.0
backports.functools_lru_cache 1.6.4
binutils_impl_linux-64 2.35.1
binutils_linux-64 2.35
bleach 4.1.0
boost-cpp 1.74.0
brotlipy 0.7.0
bwidget 1.9.14
bzip2 1.0.8
c-ares 1.17.1
ca-certificates 2022.5.18.1
cairo 1.16.0
certifi 2021.5.30
cffi 1.14.6
cfitsio 3.470
chardet 4.0.0
charset-normalizer 2.0.0
contextvars 2.4
cryptography 3.4.7
curl 7.78.0
dataclasses 0.8
decorator 5.1.0
defusedxml 0.7.1
entrypoints 0.3
expat 2.4.1
font-ttf-dejavu-sans-mono 2.37
font-ttf-inconsolata 3.000
font-ttf-source-code-pro 2.038
font-ttf-ubuntu 0.83
fontconfig 2.13.1
fonts-conda-ecosystem 1
fonts-conda-forge 1
freetype 2.10.4
freexl 1.0.6
fribidi 1.0.10
gcc_impl_linux-64 9.3.0
gcc_linux-64 9.3.0
gdk-pixbuf 2.42.6
geos 3.9.1
geotiff 1.6.0
gettext 0.19.8.1
gfortran_impl_linux-64 9.3.0
gfortran_linux-64 9.3.0
giflib 5.2.1
gmp 6.2.1
graphite2 1.3.13
gsl 2.6
gxx_impl_linux-64 9.3.0
gxx_linux-64 9.3.0
harfbuzz 2.8.2
hdf4 4.2.15
hdf5 1.10.6
icu 68.1
idna 3.1
immutables 0.16
importlib-metadata 4.8.1
ipykernel 5.5.5
ipython 5.8.0
ipython_genutils 0.2.0
jbig 2.1
jinja2 3.0.1
jpeg 9d
json-c 0.15
json5 0.9.5
jsonschema 3.2.0
jupyter_client 7.0.3
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jupyterlab 3.1.13
jupyterlab_server 2.8.1
kealib 1.4.14
kernel-headers_linux-64 2.6.32
krb5 1.19.2
lcms2 2.12
ld_impl_linux-64 2.35.1
lerc 2.2.1
libblas 3.9.0
libcblas 3.9.0
libcurl 7.78.0
libdap4 3.20.6
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libedit 3.1.20191231
libev 4.33
libffi 3.3
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libsodium 1.0.18
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libssh2 1.9.0
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libstdcxx-ng 11.2.0
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libuuid 2.32.1
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make 4.3
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ncurses 6.2
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notebook 6.3.0
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openssl 1.1.1o
packaging 21.0
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pango 1.48.7
pcre 8.45
pcre2 10.37
pexpect 4.8.0
pickleshare 0.7.5
pip 21.0.1
pixman 0.40.0
poppler 21.03.0
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postgresql 13.3
proj 8.0.1
prometheus_client 0.11.0
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pthread-stubs 0.4
ptyprocess 0.7.0
pycparser 2.20
pygments 2.10.0
pyopenssl 20.0.1
pyparsing 2.4.7
pyrsistent 0.17.3
pysocks 1.7.1
python 3.6.13
python-dateutil 2.8.2
python_abi 3.6
pytz 2021.1
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r-plyr 1.8.6
r-png 0.1_7
r-polyclip 1.10_0
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r-prettyunits 1.1.1
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r-progress 1.2.2
r-promises 1.2.0.1
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r-ps 1.6.0
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r-rappdirs 0.3.3
r-raster 3.4_13
r-rbison 1.0.0
r-rcmdcheck 1.3.3
r-rcolorbrewer 1.1_2
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r-rcppeigen 0.3.3.9.1
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readline 8.1
requests 2.26.0
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sed 4.8
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setuptools 58.0.4
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six 1.16.0
sniffio 1.2.0
sqlite 3.36.0
sysroot_linux-64 2.12
terminado 0.12.1
testpath 0.5.0
tiledb 2.3.2
tk 8.6.10
tktable 2.10
tornado 6.1
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typing-extensions 3.10.0.2
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tzcode 2021a
tzdata 2021a
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DESCRIPTION cran

R >= 2.10 depends
RIdeogram * imports
adegenet * imports
bayestestR * imports
data.table * imports
dplyr * imports
forcats * imports
gdata * imports
ggplot2 * imports
gtools * imports
reshape2 * imports
scales * imports
knitr * suggests
rmarkdown * suggests