Ecosyste.ms: Repos

An open API service providing repository metadata for many open source software ecosystems.

Package Usage: conda: r-memoise


3 versions
Latest release: over 2 years ago
27 dependent packages

View more package details: https://packages.ecosyste.ms/registries/anaconda.org/packages/r-memoise

Dependent Repos 39

ifremer-bioinformatics/samba
Standardized and Automated MetaBarcoding Analyses workflow (Mirror)
  • 1.1.0 containers/r-3.6.1/environment.yml

Size: 109 MB - Last synced: 11 months ago - Pushed: 11 months ago

FORCOLAB-UofT/INFOX
This is a prototype for overview of GitHub forks.
  • 1.1.0 environment.yaml

Size: 14.3 MB - Last synced: about 2 months ago - Pushed: 3 months ago

nixiwang/PISAnalysisTool
An analysis tool of multi-level modeling for PISA dataset
  • 1.1.0 environment.yml

Size: 44.1 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

brucemoran/tumour_only
Tumour-only DNA sequencing analysis
  • 2.0.0 environment.yaml

Size: 58.6 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

btmartin721/ClineHelpR
Detects Outliers and plots genomic clines from BGC output, and extends the plotting functionality of INTROGRESS to Correlate genomic clines and hybrid indices with Environmental Variables
  • 2.0.0 environment.yml

Size: 93.4 MB - Last synced: 7 months ago - Pushed: almost 2 years ago

villegar/DoGE
Differential Gene Expression Analysis Pipeline
  • 1.1.0.* environment.yml

Size: 16 MB - Last synced: 10 months ago - Pushed: almost 3 years ago

russHyde/russ-hyde
Public content for my blog
  • 1.1.0.* envs/environment.yaml

Size: 5.17 MB - Last synced: about 1 year ago - Pushed: about 3 years ago

mskcc/ACCESS-Pipeline
cfDNA Sequencing Pipeline with UMI
  • 1.1.0.* environment.yaml

Size: 276 MB - Last synced: 2 days ago - Pushed: over 1 year ago

moj-analytical-services/DefCalc
The deflator calculator.
  • 1.1.0 environment.yml

Size: 4.83 MB - Last synced: 10 months ago - Pushed: 10 months ago

davidlevybooth/Rhodococcus_Transcriptomics
Rhodococcus Transcriptomic Pipeline
  • 1.1.0.* environment.yaml

Size: 21.5 KB - Last synced: about 1 year ago - Pushed: about 5 years ago

web-mev/mev-normalize
  • 1.1.0 docker/environment.yml

Size: 16.6 KB - Last synced: 20 days ago - Pushed: 3 months ago

apratimbhattacharyya18/nerf
  • 1.1.0 environment.yml

Size: 491 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

ColtonGarelli/notebooks2020
  • 1.1.* environment.yml

Size: 20.5 KB - Last synced: 2 months ago - Pushed: almost 4 years ago

quadram-institute-bioscience/dadaist2
Dadaist2 🟹 Highway to R
  • 2.0.0 lab/class/environment.yml

Size: 39.4 MB - Last synced: 3 months ago - Pushed: 3 months ago

jamesfitton/cxr
Intertidal water occurrence generator from Sentinel 2 satellite data and Google Earth Engine
  • 2.0.1 environment.yml

Size: 1 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

yangmqglobe/dapipe
è‡Ș抹挖的 ATAC-Seq ćˆ†æžæ”çš‹
  • 2.0.0.* environment.yml

Size: 193 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

andrealauria104/ngsRtools
A Suite of R Packages for NGS-based Epigenomic Data Analysis.
  • 1.1.0.* data/environment.yml

Size: 714 KB - Last synced: 27 days ago - Pushed: about 1 year ago

Colorado-State-University-CMB/Intro-to-qCMB-2022
Class work for Intro to qCMB
  • 2.0.1 R_on_Summit/environment.yml

Size: 31.4 MB - Last synced: about 2 months ago - Pushed: over 1 year ago

XinyanHe/INFOX Fork of FORCOLAB-UofT/INFOX
This is a prototype for overview of GitHub forks.
  • 1.1.0 environment.yaml

Size: 12.6 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

jiangweiyao/RefNAAP
Reference based Nanopore assembly analysis pipeline
  • 2.0.0.* environment.yml

Size: 76.4 MB - Last synced: 28 days ago - Pushed: about 3 years ago

vfonsecad/multivariate_calibration
Multivariate calibration algorithms for regression in chemometrics
  • 1.1.0 environment.yml

Size: 126 MB - Last synced: about 1 year ago - Pushed: about 2 years ago

greenelab/2022-cf-sputum
Analysis of cystic fibrosis sputum RNA-seq samples for discovery of interesting gene expression pathways
  • 2.0.0 environment.yml

Size: 4.92 MB - Last synced: 9 months ago - Pushed: over 1 year ago

kevinpryan/caf-subtype-analysis
  • 2.0.1 environment.yml

Size: 56.9 MB - Last synced: 8 months ago - Pushed: 8 months ago

mr-eyes/denovo-rnaseq
De novo assembly, Differential gene expression, and annotation workflow
  • 2.0.1 environment.yml

Size: 1.79 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

dib-lab/elvers
(formerly eelpond) an automated RNA-Seq workflow system
  • 1.1.0.* elvers/rules/edgeR/environment.yml

Size: 106 MB - Last synced: 4 months ago - Pushed: over 3 years ago

LankyCyril/merip-seq-2019
  • 1.1.0 environment.yaml

Size: 531 KB - Last synced: over 1 year ago

athompson1991/crypto-project
Final project for machine learning class
  • 1.1.0 environment.yml

Size: 1.68 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

Skiracer33/stancon2019
notebook for stancon2019
  • 1.1.0 environment.yml

Size: 4.43 MB - Last synced: 12 months ago - Pushed: over 1 year ago

stefanuddenberg/psipypublish
A variant of Chris Sewell's ipypublish, designed for psychological research.
  • 1.1.0 template/environment_info/environment.yml

Size: 1.82 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

sgvaze/generalized-category-discovery
Code for our CVPR 2022 paper 'Generalized Category Discovery'. Project page: https://www.robots.ox.ac.uk/~vgg/research/gcd/
  • 1.1.0 environment.yml

Size: 3.63 MB - Last synced: 23 days ago - Pushed: over 1 year ago

gagneurlab/transmicron
  • 2.0.1.* environment.yml

Size: 16.7 MB - Last synced: 5 days ago - Pushed: over 1 year ago

samwitham/PromoterArchitecture
Arabidopsis thaliana promoter architecture analysis pipeline
  • 1.1.0 environment.yml

Size: 187 MB - Last synced: 7 months ago - Pushed: 9 months ago

mjaquiery/genetics-snakemake
Snakemake workflow for handling PRS scores and relatedness calculations for human genetic data from ALSPAC.
  • 2.0.1 workflow/envs/environment.yaml

Size: 1.44 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

paezha/PyERT-BLACK
Capstone project for course 4G06
  • 2.0.1 environment.yml

Size: 23.2 MB - Last synced: 10 days ago - Pushed: about 1 year ago

phbradley/tcr-gwas
Collaboration to find genetic variation associated with TCR repertoire differences
  • 2.0.0 environment.yml

Size: 176 MB - Last synced: 26 days ago - Pushed: over 2 years ago

magdalenarussell/mechanistic-trimming
Collaboration to identify sequence-level determinants of nucleotide trimming during V(D)J recombination
  • 2.0.1 environment.yml

Size: 185 MB - Last synced: 20 days ago - Pushed: 20 days ago

taoualiw/Data-Science-Basics
Some scripts for basic data analysis methods- Work on Progress
  • 1.1.0 environment.yml

Size: 89.8 KB - Last synced: 9 months ago - Pushed: about 5 years ago

russHyde/bfx_201909
Statistical Bioinformatics presentation
  • 1.1.0.* envs/environment.yml

Size: 327 KB - Last synced: about 1 year ago - Pushed: over 4 years ago

andurill/ACCESS-Pipeline
cfDNA Sequencing Pipeline with UMI
  • 1.1.0.* environment.yaml

Size: 276 MB - Last synced: about 1 year ago - Pushed: over 2 years ago

AmirAlavi/sc-alignment-benchmarking
Supporting data and benchmarking software for our SCIPR paper. (Under Construction)
  • 1.1.0 data/environment.yml

Size: 45.6 MB - Last synced: 10 months ago - Pushed: almost 4 years ago

IanSudbery/alvarez_et_al
Code and other scripts for Alvarez-Beneyas et al 2020
  • 1.1.0 environment.yml

Size: 41.2 MB - Last synced: 9 months ago - Pushed: over 2 years ago

eviatarbach/glaciers
Code for the paper "How sensitive are mountain glaciers to climate change?"
  • 1.1.0 environment.yml

Size: 78.5 MB - Last synced: 8 months ago - Pushed: about 6 years ago

mapcloud/phusion-jupyterlab
  • 1.0.0 environment.yml

Size: 4.88 KB - Last synced: about 1 year ago - Pushed: almost 7 years ago

storm-platform/storm-gallery
A gallery of interesting codes based on Storm Platform technologies.
  • 2.0.1.* applications/bdc-article/compendium/environment.yml
  • 2.0.1.* applications/deforestation-detection/compendium/fraction-classification/environment.yml
  • 2.0.1.* applications/sits-article/compendium/environment.yml

Size: 42.7 MB - Last synced: 23 days ago - Pushed: over 1 year ago

maizeumn/grn
Maize Gene regulatory network (MaizeGRN)
  • 1.1.0.* environment.yml

Size: 24.1 MB - Last synced: about 1 year ago - Pushed: over 3 years ago

vfonov/re_mtl
  • environment.yml

Size: 16.2 MB - Last synced: about 1 year ago - Pushed: about 4 years ago

davidlevybooth/Praxis
  • 1.1.0.* envs/environment.yaml

Size: 137 KB - Last synced: about 1 year ago - Pushed: over 3 years ago

stanfordmlgroup/lca-code
LiverCancerAssistant
  • 1.1.0.* paper/aihc-stats/environment.yml
  • 1.1.0.* paper/aihc_stats/environment.yml

Size: 651 KB - Last synced: about 1 month ago - Pushed: about 4 years ago

yangmqglobe/depipe
è‡Ș抹挖的 ChIP-Seq ćˆ†æžæ”çš‹
  • 2.0.0.* environment.yml

Size: 16.7 MB - Last synced: about 1 year ago - Pushed: about 1 year ago

nerettilab/scRNA_seq
Utilities scripts for the analysis of single cell transcriptomics
  • 2.0.0 environment.yml

Size: 23.4 KB - Last synced: 5 months ago - Pushed: almost 3 years ago

JungeAlexander/dk_data
  • 1.0.0 environment.yml

Size: 4.88 KB - Last synced: 9 months ago - Pushed: over 7 years ago

SystemsBiologist/PSCAN
  • 1.1.0 environment.yml

Size: 14.2 MB - Last synced: about 1 month ago - Pushed: over 4 years ago

jhgille2/rna_seq_pipeline_template
WIP reproducible pipeline for rna seq differential expression analysis
  • 2.0.1 environment.yml

Size: 77.1 KB - Last synced: about 1 year ago - Pushed: about 1 year ago

zia-foisal/reproducible_drought_index
A repository to practice reproducible research practices while studing the state of the drought around the world
  • 2.0.1 environment.yaml

Size: 10.7 KB - Last synced: 12 months ago - Pushed: over 1 year ago

hmartiniano/go_genes_semsim_parallel
R script to calculate a gene semantic similarity matrix for approved HGNC genes using the GOSemSim package
  • 1.1.0 environment.yml

Size: 19.5 KB - Last synced: 7 months ago - Pushed: 10 months ago

zdk123/SpiecEasiSLR_manuscript
Code to fetch data and reproduce figures for _Disentangling microbial associations from hidden environmental and technical factors via latent graphical models_
  • 1.1.0.* docker/environment.yml

Size: 190 KB - Last synced: about 1 year ago - Pushed: over 4 years ago

MichelleBadri/NormCorr-manuscript
Code and data for reproducing NormCorr manuscript
  • 1.1.0.* docker/environment.yml

Size: 106 KB - Last synced: about 1 year ago - Pushed: about 4 years ago

daewoooo/IntegrativePhasingPaper
Supplementary files for the study "Dense and accurate whole-chromosome haplotyping of individual genomes"
  • 1.0.0 environment.yml

Size: 7.65 MB - Last synced: 2 days ago - Pushed: over 6 years ago

web-mev/mev-lrt
DESeq2 implementation of likelihood ratio test
  • 2.0.1 docker/environment.yml

Size: 12.7 KB - Last synced: 20 days ago - Pushed: 3 months ago

vfonsecad/unsupervised-sample-selection
Unsupervised sample selection for multivariate calibration models in chemometrics
  • 1.1.0 environment.yml

Size: 109 MB - Last synced: about 1 year ago - Pushed: almost 3 years ago

sharonzhou/hypetrain_deep
Neural network approximation of human judgment, following our 2019 NeurIPS workshop paper Approximating Human Judgment of Generated Image Quality
  • 1.1.0.* stats_lib/environment.yml

Size: 116 KB - Last synced: 27 days ago - Pushed: over 2 years ago

Sabryr/Pmetrics_test
  • 1.1.0.* environment.yml

Size: 4.04 MB - Last synced: 9 months ago - Pushed: almost 4 years ago

TeamPerie/Report_Daphne Fork of dvginneken/Reproduce_Thesis_InstitutCurie
  • 2.0.1 environment.yml

Size: 32.6 MB - Last synced: 10 months ago - Pushed: 10 months ago

davidecarlson/Snakemake_diff_gene_expr
Differential Gene Expression with Snakemake
  • 1.1.0 environment.yml

Size: 37.1 KB - Last synced: about 1 year ago - Pushed: almost 3 years ago

yarikoptic/example-notebooks-1 Fork of dandi/example-notebooks
  • 2.0.1 000039/AllenInstitute/environment.yml

Size: 16.1 MB - Last synced: 10 months ago - Pushed: 10 months ago

kylestanley1313/ffa-p1
A repository for code related to the first iteration of functional factor analysis (FFA).
  • 2.0.1.* environment.yml

Size: 1.17 MB - Last synced: 27 days ago - Pushed: 6 months ago

ministryofjustice/occupeye-shiny-app
‱ This repository is defined and managed in Terraform
  • 1.1.0 environment.yml

Size: 488 KB - Last synced: about 1 month ago - Pushed: 6 months ago

bionetslab/ALS_MELC_Data_Analysis
  • 1.1.0 environment.yml

Size: 256 MB - Last synced: 5 months ago - Pushed: 5 months ago

robert-altwasser/umi-processing
  • 2.0.1 env/environment.yml

Size: 340 KB - Last synced: 5 months ago - Pushed: 6 months ago

Mye-InfoBank/SIMBA
A nextflow pipeline for processing sc-RNASeq data, performing QC and integration and preparing the results for further investigation using cellxgene.
  • 2.0.1 docker/rpy/environment.yml

Size: 981 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

nathan-adeyemi/Inpatient-Bed-Allocation-Optimization
  • 2.0.1.* environment.yaml

Size: 8.22 MB - Last synced: 4 months ago - Pushed: 4 months ago

Kenneth-Mitchell/HMC-Thesis
  • 2.0.1 environment.yml

Size: 8.85 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

fdu-wangfeilab/stDiff
A novel method named stDiff investigates the potential of employing diffusion models for single-cell omics generation.
  • 1.1.0 environment.yml

Size: 268 MB - Last synced: 29 days ago - Pushed: 2 months ago

quevedor2/mini_projects
Repository for mini projects that don't warrant a repo of their own
  • 2.0.0 PDAC_AhR/envs/environment.yaml

Size: 657 KB - Last synced: 11 days ago - Pushed: 12 days ago

SarthakM320/GCD
  • 1.1.0 environment.yml

Size: 1.06 MB - Last synced: about 2 months ago - Pushed: about 2 months ago

WenfeiY/P.patens_geno_design
Python and R script for Physcomitrium patens genome design
  • 2.0.1 environment.yml

Size: 865 KB - Last synced: about 2 months ago - Pushed: about 2 months ago

a-hr/pol2speed_pipeline
  • 2.0.1 environment.yaml

Size: 15.9 MB - Last synced: 7 days ago - Pushed: 7 days ago

SteinPanyu/IndependentReproducibility
  • 2.0.1 environment.yaml

Size: 20.2 MB - Last synced: 6 days ago - Pushed: 6 days ago

UBC-STAT-IT/docker-stacks
Dockerfiles for courses running JupyterHub environments.
  • stat-201/r-stat-201-student/environment.yml

Size: 177 KB - Last synced: 3 days ago - Pushed: 3 days ago

dandi/example-notebooks
  • 2.0.1 000039/AllenInstitute/environment.yml

Size: 57.5 MB - Last synced: about 14 hours ago - Pushed: about 15 hours ago